Query= MSMg01no380_h16.b1 MSMg01no380_h16.b1 CHROMAT_FILE:
MSMg01no380_h16.b1 PHD_FILE: MSMg01no380_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:34 2005
(502 letters)
>mm_chr6_34162709_34163610
Length = 902
Score = 942 bits (487), Expect = 0.0
Identities = 498/502 (99%)
Strand = Plus / Plus
Query: 1 tagaatggcacttaggtcctctgcaagagcaacaggtgctctaaactgctgagacatctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagaatggcacttaggtcctctgcaagagcaacaggtgctctaaactgctgagacatctc 260
Query: 61 tcccttccccttaattttatttttaattgacactagctgtgtgtatgggggtactatgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcccttccccttaattttatttttaattgacactagctgtgtgtatgggggtactatgta 320
Query: 121 atgattcagtgtgtgtttatatagtggactcattcacaaagccaccatctcatatactaa 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaatcagtgtgtgtttatatagtggactcattcacaaagccaccatctcatatactaa 380
Query: 181 gtcatgtgccctactaaagatgttttatgagaggagagatctctgttaagcactaattta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcatgtgccctactaaagatgttttatgagaggagagatctctgttaagcactaattta 440
Query: 241 gaatagtatactttttccacaggaataatttatgatttgagtttaatggaaaaccctaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaatagtatactttttccacaggaataatttatgatttgagtttaatggaaaaccctaaa 500
Query: 301 atagggaagaattgtgtgaaattataggaaaaaagtaagttggaatgagatagatctggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atagggaagaattgtgtgaaattataggaaaaaagtaagttggaatgagatagatctggc 560
Query: 361 aataaactctgactctgcagcttatgaactagtgaaacttatgccttcagtttttcagtc 420
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 561 aataaactctgactctgcagcttatgaactagtgaaacttacgccttcagcttttcagtc 620
Query: 421 ttcctctctctagctccaagaagtcagtanaatgacccacacagacatcttggcgtgtgg 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 ttcctctctctagctccaagaagtcagtaaaatgacccacacagacatcttggcgtgtgg 680
Query: 481 gttgcctcatttcattggttct 502
||||||||||||||||||||||
Sbjct: 681 gttgcctcatttcattggttct 702
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no380_h16.g1 MSMg01no380_h16.g1 CHROMAT_FILE:
MSMg01no380_h16.g1 PHD_FILE: MSMg01no380_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:34 2005
(469 letters)
>mm_chr6_34369594_34370467
Length = 874
Score = 808 bits (418), Expect = 0.0
Identities = 458/474 (96%), Gaps = 5/474 (1%)
Strand = Plus / Minus
Query: 1 ctaacgaggaatgaggagagtagcctgtagtcataggcttagaccctatacagttggcgc 60
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 674 ctaacgaggagtgaggagagtagcctgtagtcataggcttagaccctatatagttggcgc 615
Query: 61 ctgaacccaacgcctgaaggcgcggcaggaatctgaaagacagaggcagatccttgcttc 120
|||||||||||||||| || | |||||||||||||||||||||||||||||||||||||
Sbjct: 614 ttgaacccaacgcctgagggtgtggcaggaatctgaaagacagaggcagatccttgcttc 555
Query: 121 actaatgctagtggtattttctgaaactcccaacaggcttacacttcccatttcttcctc 180
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 554 actaatgctagcggtattttctgaagctcccaacaggcttacacttcccatttcttcctc 495
Query: 181 tccagggaattaaaagcaagcaacacagttgcacacatgactacaagactggattgctaa 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 494 tccagggaattaaaagcaagcaacacagttgtacacatgactacaagactggattgctaa 435
Query: 241 ataatatggggaaatactttattttacctgagctactgttttcttgtgttttgcagcaat 300
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ataaaagggggaaatactttattttacctgagctactgttttcttgtgttttgcagcaat 375
Query: 301 ctctttgatcttgggaatctccattactacggggtcttctggcttggcactagacgaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ctctttgatcttgggaatctccattactacggggtcttctggcttggcactagacgaaga 315
Query: 361 aagagagctggagtaaaaatcaccatggctactgtgtgcccgtgaacatccctgccagga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aagagagctggagtaaaaatcaccatggctactgtgtgcccgtgaacatccctgccagga 255
Query: 421 cagcatcaaggctga-----gcagcatttttcctctgcaaggcaggcaggaaga 469
||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 254 cagcatcaaggctgagcactgcagcatttttcctctgcaaggcaggcaggaaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 874
Length adjustment: 10
Effective length of query: 459
Effective length of database: 864
Effective search space: 396576
Effective search space used: 396576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
