BAC Information

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BAC

Clone NameMSMg01-380K08
Chromosome6 (Build37)
Map Location 125,157,264 - 125,157,736
singlet/doubletsinglet
Overlap genenone
Upstream geneVmn2r27, LOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51
Downstream geneVamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b, Ntf3, LOC100043565
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380K08.T7 (MSMg01no380_k08.b1)MSMg01-380K08.TJ (MSMg01no380_k08.g1)
ACCAG484972AG484973
length769772
length of high quality
(start - end)
476 (33 - 508)340 (64 - 403)
definitionCHROMAT_FILE: MSMg01no380_k08.b1 PHD_FILE: MSMg01no380_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:47 2005CHROMAT_FILE: MSMg01no380_k08.g1 PHD_FILE: MSMg01no380_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAAATCT
TTCCGCCTCTGCCTCCCAAGGGCTGAGATTACAGGCAAAATAATATTTAT
AAATTCCTAATAATTTAAACACTGCTTACCAATTTAAGCCAAAGTAATGA
TAATAGTAAAAGTAGGAAGGAAGAGATGTGGAGTGAAAGAGAAAAGGAGA
GGGAGAGAGGGAGGCGTGACCCAGTGTCCTGGCAAGATGAGTTCTTCCTG
TGAATAGCTGCCAGCTCTCTTCCAAAACCGTACCTGGGGCTGGGGAGGTG
GCTCACCGGTATTTGTGCTAACTGTGCAAACCTAAGGACTTGAACAAGAT
CCCCATCGCCCACTGAAAAGCCAGGTGCAGCAGAGCATACGTCTGTGACC
CAAGTGCTGGGCCACAGAGACCGGTGCATCCTGGGCCCTCAGTGGTCAGC
CAGTCTAGCCTACAGAACACGCTCCAGCTCCAGTAACAGACTTGTCTCAA
AAACTAAGGTGGAAGGGCCAGATGTGTTGGCACATACTGCCACTCAGGTG
GCAGATACTTGACAGATCTCACTGAGCTTGAGATCCATCTAGTCTACCTA
GAGTTTCCAGGCTATGTTGGGCTACATATAGATAGACTTGACAGACTAAT
GTTTTTGTGTTCAGATTCCCTCTCCAAAAATCCTGACTTGTTTGGACCTC
CCCTATTCTTACCCTACTGGCTATTTAACTTCCATTTCCAGGTTCTCTTC
CCCCCACAATTTGCAGCTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXATGTGCATTTGGACATACACCCAAAAAGGACTGGAGG
TTGATAAGATGGCCCAGTGCTGAAACATACTTGCCATACAAGCCTGACTA
TCTTGAGTTCGACTAGAAGAGAACCCACTCTGAAAGTTGTCCATTATCCT
TTATCCATGTGTCATGGCAGGTACGCACACCCACACACAATACATTCATG
AGTGCACACACACACACACACACACACACACACACACACACACACACACT
AATAAAGGTTTTTTTTAGACTGGTTCTGTAGCTCACTGTTAGTGCTTGTC
TAGCATGTACCAGGCCGTAGGTTCAGTCCCTGGTACGTACAAAATTAGAA
CAAACCACAAAGCCAAAACTCTCAGGTGATGGGAACAGTGCTGTGTGCCT
GGAACCAGCCTCCCCTGGACGCCATAGTAAGCAAGAAGATTCAAAGAAAT
AGTATCTGGAGAGTTAGCACTTATGGGCTTTATGCTCCAGTACCCGGTCC
ATGTGACTACAGCCCCCCTACCTCTAACTCTACCCCAGTCAATCCAGTGC
CACTTCGGTCCCCAAGGTACCTGTCACAATAACCTTTTTTGAGTATTGTT
TTTTTGGTGCCGCATCTTTCAAAACACTATATATTTTTTTTTTCTTCCCC
CCATACATCTATTCTCTTCTTCTTTTTCCTCTACTTCTTTTTCTTCCTCC
CCCCACTCTTTGTTGGTGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_k08.b1 MSMg01no380_k08.b1 CHROMAT_FILE:
MSMg01no380_k08.b1 PHD_FILE: MSMg01no380_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:47 2005
         (476 letters)



>mm_chr6_125157132_125158009
          Length = 878

 Score =  762 bits (394), Expect = 0.0
 Identities = 455/478 (95%), Gaps = 10/478 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagaaatc--tttcc-gcctctgcctcccaagggctgagattacaggcaaaata 60
           ||||||||||||||     || ||||||||||||||||||||||||||||| ||||||||
Sbjct: 605 ggaattcagaaatcca---cctgcctctgcctcccaagggctgagattacaagcaaaata 549

                                                                       
Query: 61  atatttataaattcctaataatttaaacactgcttaccaatttaagccaaagtaatgata 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 atatttatgaattcctaataatttaaacactgcttaccaatttaagccaaagtaatgata 489

                                                                       
Query: 121 atagtaaaagtaggaaggaagagatgtggagtgaaagagaaaaggagag-g-gagagagg 178
            |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 488 ttagtaaaagtaggaaggaagagatgtggagtgaaagagaaaaggagagagagagagagg 429

                                                                       
Query: 179 gaggcgtgacccagtgtcctggcaagatgagttcttcctgtgaatagctgccagctctct 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gaggcgtgacccagtgtcctggcaagatgagttcttcctgtgaatagctgccagctctct 369

                                                                       
Query: 239 tccaaaaccgtacctggggctggggaggtggctcaccggtatttgtgctaactgtgcaaa 298
           ||||||||||||||||||||||||||||||||||||||| |   ||||||||||||||||
Sbjct: 368 tccaaaaccgtacctggggctggggaggtggctcaccggaaaaagtgctaactgtgcaaa 309

                                                                       
Query: 299 cctaaggacttgaacaagatccccatcgcccactgaaaagccaggtgcagcagagcatac 358
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 308 cctaaggacttgaacaagatcc--atcgcccactgaaaagccaggtgcagcagagcatac 251

                                                                       
Query: 359 gtctgtgacccaagtgctgggccacagagaccggtgcatcctgggccctcagtggtcagc 418
            |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 250 atctgtgacccaagtgctgggccacagagaccggtacatcctgggccctcagtggccagc 191

                                                                     
Query: 419 cagtctagcctacagaacacgctccagctccagtaacagacttgtctcaaaaactaag 476
           |||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 190 cagtctagccaacagaacatactccagctccagtaacagacttgtctcaaaaactaag 133


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 878
Length adjustment: 10
Effective length of query: 466
Effective length of database: 868
Effective search space:   404488
Effective search space used:   404488
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)