Query= MSMg01no380_l22.b1 MSMg01no380_l22.b1 CHROMAT_FILE:
MSMg01no380_l22.b1 PHD_FILE: MSMg01no380_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:54 2005
(274 letters)
>mm_chr6_123179896_123180569
Length = 674
Score = 513 bits (265), Expect = e-150
Identities = 271/273 (99%)
Strand = Plus / Plus
Query: 2 aataggaatacatactgtgatgaggatctacctgggacaagtggcaggctgaagtggtga 61
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aataggaatacgtactgtgatgaggatctacctgggacaagtggcaggctgaagtggtga 261
Query: 62 agtagatcaagacagcagagtcccagggatgtgtcagaagtataatatctcagagccaga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agtagatcaagacagcagagtcccagggatgtgtcagaagtataatatctcagagccaga 321
Query: 122 agccttcaaaacaacaagaaaccaaattattgaagggggtgtgaaatgtgacaacaagaa 181
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agccctcaaaacaacaagaaaccaaattattgaagggggtgtgaaatgtgacaacaagaa 381
Query: 182 gaaagtataaggtcatggaaattgcaggtgcctgagggtgaaatatttctagattgtgag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gaaagtataaggtcatggaaattgcaggtgcctgagggtgaaatatttctagattgtgag 441
Query: 242 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 274
|||||||||||||||||||||||||||||||||
Sbjct: 442 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space: 176225
Effective search space used: 176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no380_l22.g1 MSMg01no380_l22.g1 CHROMAT_FILE:
MSMg01no380_l22.g1 PHD_FILE: MSMg01no380_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:54 2005
(454 letters)
>mm_chr6_123582120_123582973
Length = 854
Score = 242 bits (125), Expect = 4e-68
Identities = 160/173 (92%), Gaps = 4/173 (2%)
Strand = Plus / Minus
Query: 158 cactcattcatttgctcttcttaaataaaac-aaaataatttaataaaagaacactatga 216
||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct: 243 cactcattcatttgctcttcttaaataaaacaaaaataatttaataaaacaaaactatga 184
Query: 217 catggaagtcaaacaacagaaaggaaagtgcctcctcttctatagtgttctctgaactat 276
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 183 catggaagtcagacaacagaaaggaaagtgcctcctcttctatagcgttctctgaactat 124
Query: 277 atgggaagggttattattttattattttttaaaaataatattcttctctcata 329
| | ||||||||||| |||||||||||||| |||||| |||| ||||||||
Sbjct: 123 aagagaagggttattgttttattatttttttaaaata---ttctcctctcata 74
Score = 174 bits (90), Expect = 9e-48
Identities = 108/114 (94%)
Strand = Plus / Plus
Query: 48 aatgaatgaatgaactgaataaaaatctattcactagattaaaaatgaacaactgaacac 107
||||||||||||||||||||||||||||| ||| | | |||||||||||||||||||||
Sbjct: 248 aatgaatgaatgaactgaataaaaatctagtcaatcggttaaaaatgaacaactgaacat 307
Query: 108 tcacttatacctgctgggagagggaaaaccagttttctcccacagagtgacact 161
||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 308 tcacttatacctgctgggacagggaaaaccagttttctcccacagagtgacact 361
Score = 137 bits (71), Expect = 1e-36
Identities = 115/131 (87%), Gaps = 6/131 (4%)
Strand = Plus / Plus
Query: 326 catatcaaccactccaaggcaagtctcatgttcaggagcaaatgcccaacataatggact 385
|||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 365 catatcaaccactccagggcaggtcttatgttcaggagcaaatgcccaacataatggact 424
Query: 386 acagtttttttgtgtgtatgtatgttttaatttgtttacaatgtgatatgttgctttatc 445
|| || |||| |||||||||||||||||||||| ||||| ||||| || ||| ||||
Sbjct: 425 cca-ttgtttt-tgtgtatgtatgttttaatttgcttacagtgtgacattttg--ttata 480
Query: 446 a--tgttttgg 454
| ||||||||
Sbjct: 481 aattgttttgg 491
Score = 83.9 bits (43), Expect = 2e-20
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 1 agcagttggaatgtattgtatgagaggagaatatttaaaaaaaataa 47
|||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 56 agcagttggaatgtattgtatgagaggagaatattttaaaaaaataa 102
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 4
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space: 374736
Effective search space used: 374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
