XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGTACATAACTACCATGTCCTGGCTGGACAGAGAGCAAGAATTGTGTAA
ACATATAACAGAAAATAAAGGAAGCCCTTAGTATATGTGAATCCATTGAA
TGGCCATGCTAAACTTCCACTTGTCCAAATCATTCCATCATTATTCTCGT
ATTCTAGTTTTCAGAAAAATATGGTACATATATTTTCCTTCCATTTAAAC
CATAATTTGTTTTAGTAAGGATTCATTTTTTTAGCTCTCCATATTTAATT
TCTTGTGAAGTTCATTAATCATTATTTTTTTTCCTGTGGATGTTATGTAT
CCTTTTACTGTGCTGTCTATTTTTGTAGCATTTTCCTCCACATATAGTTT
GTCATTTTGTATCCTGAACTTATTTGTCACATAGCTATTTTTTTTTTCAT
TTTTCCTGTCTACCTATAGGTTACCCAAAGCATAATTGCCCAAAGTGCTT
TTGCTTTTGTTAATGATTTAAGATCCAAATGGTCCAGGCTAGTGTGTTTA
TTAACTTACCACATCTCATAAATATTTAGATCATATGTTCATGTATTCAT
ACTTGACCTCAAAGTTTTGGACTTCTTACTGGGGGTAGTTTGTAAATCAA
GGATGTTAATGTACTATTACATTTGGCAATTTGTGTAGGTCTGGTAAATT
GGGTTGTTTTGCTTTTTGGTTTTGGTTCGGCCTGCTTTGCCCN

GAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGGCTGAGAA
GCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCTTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAA
AACTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGGGGAACACT
CCTCCATTGTTGGTGGGATTGCAAGCTTGCACAACCACTCTGGAAATCAG
TCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGATGTCCCAACCGGGAAGAAGGACAT
ATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGA
AAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGCAC
ATTTACACAATGGAATACTACTCAGCTATTNAAAAATGAATTTATGAAAT
TCCTAGTCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACC
CCATCCCAAGGAACTCACCCAATATGTACTCCCTGATAAGTGGAATTAGC
CCCGAAACTTAGGATACCCACGATATAAGAACAAATTTGCTAACACCTGG
AATTCCTGAAGAAGGAAGAACCAAAGGGGGGACCTTTTACCCTTCCCTAA
AAGGGGAAAA

Query= MSMg01no380_p24.b1 MSMg01no380_p24.b1 CHROMAT_FILE:
MSMg01no380_p24.b1 PHD_FILE: MSMg01no380_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:16 2005
         (580 letters)



>mm_chr6_105882109_105883087
          Length = 979

 Score = 1060 bits (548), Expect = 0.0
 Identities = 569/576 (98%), Gaps = 1/576 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagtacataactaccatgtcctggctggacagagagcaagaattgtgtaaacat 64
           |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccattacaaaactaccatgtcctggctggacagagagcaagaattgtgtaaacat 264

                                                                       
Query: 65  ataacagaaaataaaggaagcccttagtatatgtgaatccattgaatggccatgctaaac 124
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 265 ataacagaaaataaaggaagcccttagtatatgtgaaaccattgaatggccatgctaaac 324

                                                                       
Query: 125 ttccacttgtccaaatcattccatcattattctcgtattctagttttcagaaaaatatgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttccacttgtccaaatcattccatcattattctcgtattctagttttcagaaaaatatgg 384

                                                                       
Query: 185 tacatatattttccttccatttaaaccataatttgttttagtaaggattcatttttttag 244
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 385 tacatatattttccttccatttaaaccataatttgttttattaaggattcatttttttag 444

                                                                       
Query: 245 ctctccatatttaatttcttgtgaagttcattaatcattattttttttcctgtggatgtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 445 ctctccatatttaatttcttgtgaagttcattaatcattattttttttcctgtggatgtc 504

                                                                       
Query: 305 atgtatccttttactgtgctgtctatttttgtagcattttcctccacatatagtttgtca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgtatccttttactgtgctgtctatttttgtagcattttcctccacatatagtttgtca 564

                                                                       
Query: 365 ttttgtatcctgaacttatttgtcacatagctattttttttttcatttttcctgtctacc 424
           |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 565 ttttgtatcctgaactcatttgtcacatagctattttttttt-catttttcctgtctacc 623

                                                                       
Query: 425 tataggttacccaaagcataattgcccaaagtgcttttgcttttgttaatgatttaagat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tataggttacccaaagcataattgcccaaagtgcttttgcttttgttaatgatttaagat 683

                                                                       
Query: 485 ccaaatggtccaggctagtgtgtttattaacttaccacatctcataaatatttagatcat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ccaaatggtccaggctagtgtgtttattaacttaccacatctcataaatatttagatcat 743

                                               
Query: 545 atgttcatgtattcatacttgacctcaaagttttgg 580
           ||||||||||||||||||||||||||||||||||||
Sbjct: 744 atgttcatgtattcatacttgacctcaaagttttgg 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 979
Length adjustment: 10
Effective length of query: 570
Effective length of database: 969
Effective search space:   552330
Effective search space used:   552330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)