Query= MSMg01no381_a13.b1 MSMg01no381_a13.b1 CHROMAT_FILE:
MSMg01no381_a13.b1 PHD_FILE: MSMg01no381_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:18 2005
(541 letters)
>mm_chr6_77849573_77850513
Length = 941
Score = 870 bits (450), Expect = 0.0
Identities = 483/494 (97%), Gaps = 2/494 (0%)
Strand = Plus / Minus
Query: 49 tctgtgttcccacttgcacagctgaaagagttagctgagaagaaagttttccttttccta 108
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tctgtgttcccacctgcacagctgaaagagttagctgagaagaaagttttccttttccta 549
Query: 109 aatttgagggctttgaacagcatgcatgcttgaataggagagaatatacgc-atttcttc 167
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 548 aatttgagggctttgaacagcatgcatgcttgaataggagagaatatac-ctatttcttc 490
Query: 168 caaaatgtgccaacactatgcctccagtcagctatctggaagccatttttgagtctttgc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 caaaatgtgccaacactatgcctccagtcagctatctggaagccatttttgagtctttgc 430
Query: 228 cattgcctggaaaggtgactgaaaattctgtgctctttgtaacaaagtatacacattgag 287
|||||| |||||||||||||||||| | |||| |||||||||||||||||||||||| |
Sbjct: 429 cattgcttggaaaggtgactgaaaaaccagtgccctttgtaacaaagtatacacattggg 370
Query: 288 tttttgcccagaaaaatcatctattgtttttcttttgagagcctgtaaccatttatcatt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tttttgcccagaaaaatcatctattgtttttcttttgagagcctgtaaccatttatcatt 310
Query: 348 gcaatatcccttggcttataaattggaagtgttttattttttctattttttaagaaatat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatatcccttggcttataaattggaagtgttttattttttctattttttaagaaatat 250
Query: 408 atttatttttattttatgtgtgtggatgttttgcctgcatatatgcagatttgtacacaa 467
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 249 atttatttttattttatgtgtgtggatgttttgcctgcataaatgcagatttgtacacaa 190
Query: 468 cacaatgtgtaccgggtatgtagtgccataagagagagttgggttttctggttctggagt 527
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 cacaatgtgtacctggtatgtagtgccataagagagagttgggttttctggttctggagt 130
Query: 528 tacagtaattaagc 541
||||||||||||||
Sbjct: 129 tacagtaattaagc 116
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no381_a13.g1 MSMg01no381_a13.g1 CHROMAT_FILE:
MSMg01no381_a13.g1 PHD_FILE: MSMg01no381_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:18 2005
(484 letters)
>mm_chr6_77673511_77674395
Length = 885
Score = 907 bits (469), Expect = 0.0
Identities = 481/485 (99%), Gaps = 1/485 (0%)
Strand = Plus / Plus
Query: 1 ttttcaaattaaattttcaaactcctccagttttagaaagtatttgtttt-tctcatttg 59
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ttttcaaattaaattttcaaactcctccagttttagaaagtatttgttttatctcatttg 260
Query: 60 tacctgaaatttaacaatcccattagcgacagatatgagtttctgagcaatacaagacat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacctgaaatttaacaatcccattagcgacagatatgagtttctgagcaatacaagacat 320
Query: 120 catggagagaactgagagatggcagtaaagggtctgaggttctgagaacagtgaggaatt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catggagagaactgagagatggcagtaaagggtctgaggttctgagaacagtgaggaatt 380
Query: 180 gaacaaatgtaagaaataatggtgaaatattttgagacttgagatagaacacagcaagct 239
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 gaacaaatgtaagaaataatggtgaaatattttgagatttgagatagaacacagcaagct 440
Query: 240 gctcatcacaccatcctcctaaaaggttatgagcaggaagttgtatagaattatgtgata 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctcatcacaccatcctcctaaaaggttatgagcaggaagttgtatagaattatgtgata 500
Query: 300 ttctgcaaactgtacagtgtaaaggaaggctagaaaagtacagagaaaataaaccacaat 359
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 ttctgcaaactgtacagtgtaaaggaaggctagaaaagtgcagagaaaataaaccacaat 560
Query: 360 gggacactctgagggattttatgaggggccatatgaatacaaccctagtagagaccttat 419
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggacactatgagggattttatgaggggccatatgaatacaaccctagtagagaccttat 620
Query: 420 atcttaaccagacatggcagcagaaccctgccaacaaggcagtgtgtgtccaattatttc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atcttaaccagacatggcagcagaaccctgccaacaaggcagtgtgtgtccaattatttc 680
Query: 480 ttgca 484
|||||
Sbjct: 681 ttgca 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 885
Length adjustment: 10
Effective length of query: 474
Effective length of database: 875
Effective search space: 414750
Effective search space used: 414750
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
