BAC Information

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BAC

Clone NameMSMg01-381C19
Chromosome6 (Build37)
Map Location 24,006,710 - 24,189,500
singlet/doubletdoublet
Overlap geneLOC100041082, Slc13a1
Upstream geneAass, EG668044, EG546894, EG668053, EG384356, Fezf1, Cadps2, Rnf133, Rnf148, Tas2r118
Downstream geneLOC100041094, Iqub, Ndufa5, Asb15, EG626715, Lmod2, Wasl, 4932701A20Rik, Hyal4, Spam1, Hyal5, 6332401O19Rik, LOC384358
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381C19.T7 (MSMg01no381_c19.b1)MSMg01-381C19.TJ (MSMg01no381_c19.g1)
ACCAG485377AG485378
length736782
length of high quality
(start - end)		544 (60 - 603)481 (69 - 549)
definitionCHROMAT_FILE: MSMg01no381_c19.b1 PHD_FILE: MSMg01no381_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:29 2005CHROMAT_FILE: MSMg01no381_c19.g1 PHD_FILE: MSMg01no381_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,189,114 - 24,189,500)(24,006,710 - 24,007,188)
sequence
CGGGCGCTAAACGACTCACTATATTCAGAGAATCCGCGGAATTCCATTTA
TGTCTCCTCCAACCTCTTCTTCTCAAGGAAGAGCCCCCCTTTTTCACTTC
CAAGTTCTACTTTCCATATTTGTAATGTTCTATAAATAGAACAAATACGA
TATACTGTTTATTTTTGCATTTGACCATGCTGCTTTATCTATTTTTCCAT
CAATTTTCTATATTCTTTACAAAATGACTTTAAACTTATTTTATGTGTAT
GAATATTTCACTTGCATATATTTGCGTGTACCCTGTGAGTGCCCTTCTTG
TGGAAGCTAGAAGAACCAGATCTCCCAGAGGGCTGTAAACTGCACTGTAG
TTTGCTGGGAACCAAACTCCAGGGTTCTGTAAGGGCAGCAAGAGCTCTTG
ACCACTGAGCCAGCTCCTTCCCCCCAGTTCTCTGCTCTCTTTATCCATTT
CTCCTTTGTTGCTCACAGTAAACTATCAGCTACTAGTTGAGGATAATGCT
TGTACCTTCTTTGAGAGACATTGGGTTTTGCTGCTAATTCCAGATCATTT
AAAGCAATGAAATCTAGGAATGATTGGAGGCACAATTTCTTGCAATTTCC
TACAAAGGTTAATCTTTTCCTCAATCATTATTTATTCTAATATGTAGCTC
CTCACAGCCTCTGACTAAACCGTGGTAATTTACCAGAGCCTCCTGCCTTG
GAGAGAGGTGGGCTTTAAATTATATTCCCAAAGCCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAATTAAATAGTTAAAAATAAAGACAATTGAT
TTATAACATTTATTCATCATAATTTAGAATTAATAACAGATTATTAAATA
TGAAAGAATGAATAGATGGCAATGTATGTAGTAAATCAGAGAGGGTAAAA
TGTTAATAGAATAGTAAGTAGATTGGGTGTGGATGTAGGGTTACTTCATA
AAGTTACTTTATTTTTGCTTATGTTTAAGAATTTTCTTTAGAACATGGTC
AGGGAAAAACCTCTATTCATTCAATCGGTTTATACAAAGCCTTGGAAGAG
AGGCAATGAATCCTATATCAATGATCTGTGAGAACAGAAGAAAGAAAGTA
GCAACAGGAGTCTAATATCAATAGAGCCATGCTGACATATAATAATGCTA
TAAGCTTGACAATGAATTGAACAGGAATGTGGAGGGAAAGTGCAGTCTAA
TTTCATATATGAACATTGCTAGAAAACATTAAAATAGCTTTTTGACCCTA
GGAAAAAGATAGATCTATTAAATAAGATATATATAGTTCATTATTAGGGT
AAAAGTGGGTGGAACTCTCGATTATAAGAAAATGATATGCTGATTATTAT
GGTTTAAAAAGGGTTCCATATAATCTAGCCTTAAAATAATGGGGGGGAAA
AACCCCCTTGGCAAAAGAAAAAACCCCCCCCTAAGAACCCCCCCAAAAAG
TCCGAAACCCCGTGGGGAGCACTTTCTGACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_c19.b1 MSMg01no381_c19.b1 CHROMAT_FILE:
MSMg01no381_c19.b1 PHD_FILE: MSMg01no381_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:29 2005
         (544 letters)



>mm_chr6_24188557_24189500
          Length = 944

 Score =  741 bits (383), Expect = 0.0
 Identities = 386/387 (99%)
 Strand = Plus / Minus

                                                                       
Query: 158 ttacaaaatgactttaaacttattttatgtgtatgaatatttcacttgcatatatttgcg 217
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 ttacaaaatgactttaaacttattttatgtgtatgaatatttcacttgcatatatttgcg 885

                                                                       
Query: 218 tgtaccctgtgagtgcccttcttgtggaagctagaagaaccagatctcccagagggctgt 277
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 tgtaccctgtgagtgcccttcttgtggaagctagaagaaccagatctcccagagggctgt 825

                                                                       
Query: 278 aaactgcactgtagtttgctgggaaccaaactccagggttctgtaagggcagcaagagct 337
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 aaactgcactgtagtttgctgggaaccaaactccagggttctgtaagggcagcaagagct 765

                                                                       
Query: 338 cttgaccactgagccagctccttccccccagttctctgctctctttatccatttctcctt 397
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 cttgaccactgagccagctccttccccccagttctctgctctctttatccatttctcctt 705

                                                                       
Query: 398 tgttgctcacagtaaactatcagctactagttgaggataatgcttgtaccttctttgaga 457
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tgttgctcgcagtaaactatcagctactagttgaggataatgcttgtaccttctttgaga 645

                                                                       
Query: 458 gacattgggttttgctgctaattccagatcatttaaagcaatgaaatctaggaatgattg 517
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gacattgggttttgctgctaattccagatcatttaaagcaatgaaatctaggaatgattg 585

                                      
Query: 518 gaggcacaatttcttgcaatttcctac 544
           |||||||||||||||||||||||||||
Sbjct: 584 gaggcacaatttcttgcaatttcctac 558


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no381_c19.g1 MSMg01no381_c19.g1 CHROMAT_FILE:
MSMg01no381_c19.g1 PHD_FILE: MSMg01no381_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:29 2005
         (481 letters)



>mm_chr6_24006510_24007390
          Length = 881

 Score =  903 bits (467), Expect = 0.0
 Identities = 476/479 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaattaaatagttaaaaataaagacaattgatttataacatttattcatcataatttaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaattaaatagttaaaaataaagacaattgatttataacatttattcatcataatttaga 260

                                                                       
Query: 61  attaataacagattattaaatatgaaagaatgaatagatggcaatgtatgtagtaaatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attaataacagattattaaatatgaaagaatgaatagatggcaatgtatgtagtaaatca 320

                                                                       
Query: 121 gagagggtaaaatgttaatagaatagtaagtagattgggtgtggatgtagggttacttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagagggtaaaatgttaatagaatagtaagtagattgggtgtggatgtagggttacttca 380

                                                                       
Query: 181 taaagttactttatttttgcttatgtttaagaattttctttagaacatggtcagggaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaagttactttatttttgcttatgtttaagaattttctttagaacatggtcagggaaaa 440

                                                                       
Query: 241 acctctattcattcaatcggtttatacaaagccttggaagagaggcaatgaatcctatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct: 441 acctctattcattcaatcggtttatacaaagccttggaagagaggcaatcaaacctatgt 500

                                                                       
Query: 301 caatgatctgtgagaacagaagaaagaaagtagcaacaggagtctaatatcaatagagcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caatgatctgtgagaacagaagaaagaaagtagcaacaggagtctaatatcaatagagcc 560

                                                                       
Query: 361 atgctgacatataataatgctataagcttgacaatgaattgaacaggaatgtggagggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgctgacatataataatgctataagcttgacaatgaattgaacaggaatgtggagggaa 620

                                                                      
Query: 421 agtgcagtctaatttcatatatgaacattgctagaaaacattaaaatagctttttgacc 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtgcagtctaatttcatatatgaacattgctagaaaacattaaaatagctttttgacc 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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