BAC Information

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BAC

Clone NameMSMg01-381G09
Chromosome6 (Build37)
Map Location 83,673,837 - 83,674,095
singlet/doubletsinglet
Overlap geneVax2
Upstream geneLOC100043412, Hk2, EG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1
Downstream geneAtp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, Dysf, LOC665114, 4930504D19Rik, Cyp26b1, Exoc6b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381G09.T7 (MSMg01no381_g09.b1)MSMg01-381G09.TJ (MSMg01no381_g09.g1)
ACCAG485548AG485549
length756752
length of high quality
(start - end)
249 (61 - 309)245 (74 - 318)
definitionCHROMAT_FILE: MSMg01no381_g09.b1 PHD_FILE: MSMg01no381_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:47 2005CHROMAT_FILE: MSMg01no381_g09.g1 PHD_FILE: MSMg01no381_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGAC
ATCCCTAGACAAATGGATGGATCTGGAGGATATCATCCTGAGTGAGGTAA
CCCAGTCACAAAAGAACACACATGGTATGCACTCACTGATAAGTGGATAT
TAGTCCAAAAGCTCGGAATACCCAAGATACAATTCACAGACCATATGAAG
CTCAAGAAAAAGGAAGACCAAAATGTGGATACTTCAGTCCTTCTTAGAAG
GGGGAACAAAATACTCACAGTAGGTAGAGAGAAGGAGGGACTTGGGAGGA
AGAGAGTTTTTTTTTTTCCNNCCCCNCCTTCNCCCCCCCCCCNCNCCCTT
TCCTCTCTCTCCTTCCCCCCTTTTTTTTTTTCCCCCTCCTCTCCTTTTTT
CCCCCCTTTCCCCCTTTTTTTTTTTTTTCTTCCTCGTCCTCCCCGCCCTC
GTTTCTTCCCCTTTTTGCTTTTCTTTCCCCCCCTCCCTTTCCCTTTCTTT
TCTTTTTCCCTCCCCCGTCTTTTTTCCCCCCCCTTTCTTCCTCCCTCTTC
TTCTTTCCCCCCTCTCTCCTTTCTCCCCTCTCCCCCCCCTTTTCCCCCCT
TTTCCCCCTCTACCTTTCTCCTCCCCCCCCTCCTTTTTTATTACCCTCCC
TTTTTCCCTCCCATACCTTCTTTTTTATTTTTCATTTTCCCATCCGCCAC
CCTCTTACTCCCTCCTCTCATTCACTTTTCCTGGCCGTTCTACCATCTCG
CTTTTC
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCGGAACATAGAGAGACTC
CATCTCCATTTCCCTCCCTCTCTCTCTCTGTCTCTCTCTCTCTCTGTCTC
TCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTTTCTC
ACACACACACACACCACACACAAAGGAGACAATTCTTACGTCACCACACA
GCAACATCTATCACAAATCAAGAGTCACTAGAGTGGTGTGACTCTGGGAA
GAGAGTCTCCAAGCAGAGCCATAGTGCCCTCAGGGATCTTGAGTGTTTAC
AAAGATGGCATTTCATATTGGTTGGAGGAACGACAGGGCTGTTAAAGACC
TGGGTCTTGGACAGCCAGCTCATTGTTTGGGATAAGCTGATCCATCTGAC
ATTGCATGCATACCAAATTAACACTTANATGTGAAAAATAGAGCTTCAAA
AATCAAAGAAACACACGCGCGTGCATACACAGGCATAAAACACAAAAAGG
AAAACAAGGACCAAGGAGACTAAATATGAGCAAATTCTTCTCGCAGAAGT
GAGAGAATTAAACGCAGAGACCCATAACTTGCGGAATAGTCAGAAAAAAC
CAAATGCTCTAAACCAGGGCCAAAACTTGGGAATCCGGGGGAAAAATGAA
CAAGTTTTCCCAAAAAAACCACCACCCTCGCCAAATTAAAAAAAAAAAGG
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_g09.g1 MSMg01no381_g09.g1 CHROMAT_FILE:
MSMg01no381_g09.g1 PHD_FILE: MSMg01no381_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:48 2005
         (245 letters)



>mm_chr6_83673510_83674154
          Length = 645

 Score =  435 bits (225), Expect = e-126
 Identities = 245/259 (94%), Gaps = 14/259 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccggaacatagagagactccatctccatttccctccctctctctctctgtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 caggacagccggaacatagagagactccatctccatttccctccctctctctctctgtct 527

                                                                       
Query: 61  ctctctctctctg------tctctctctgtctc------tctctctctctctctc--tct 106
           |||||||||||||      ||||||||||||||      ||||||||||||||||  |||
Sbjct: 526 ctctctctctctgtctctctctctctctgtctctctctgtctctctctctctctctttct 467

                                                                       
Query: 107 ctctctctgtctctctttctcacacacacacacaccacacacaaaggagacaattcttac 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ctctctctgtctctctttctcacacacacacacaccacacacaaaggagacaattcttac 407

                                                                       
Query: 167 gtcaccacacagcaacatctatcacaaatcaagagtcactagagtggtgtgactctggga 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gtcaccacacagcaacatctatcacaaatcaagagtcactagagtggtgtgactctggga 347

                              
Query: 227 agagagtctccaagcagag 245
           |||||||||||||||||||
Sbjct: 346 agagagtctccaagcagag 328


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)