BAC Information

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BAC

Clone NameMSMg01-381G10
Chromosome6 (Build37)
Map Location 83,673,816 - 83,674,095
singlet/doubletsinglet
Overlap geneVax2
Upstream geneLOC100043412, Hk2, EG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1
Downstream geneAtp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, Dysf, LOC665114, 4930504D19Rik, Cyp26b1, Exoc6b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381G10.T7 (MSMg01no381_g10.b1)MSMg01-381G10.TJ (MSMg01no381_g10.g1)
ACCAG485550AG485551
length810759
length of high quality
(start - end)
249 (62 - 310)454 (75 - 528)
definitionCHROMAT_FILE: MSMg01no381_g10.b1 PHD_FILE: MSMg01no381_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:48 2005CHROMAT_FILE: MSMg01no381_g10.g1 PHD_FILE: MSMg01no381_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATGCGCGGAATTCATGA
TTTTCTCTAGACAAATGGATGGATCTGGAGGATATCATCCTGAGTGAGGT
AACCCAGTCACAAAAGAACACACATGGTATGCACTCACTGATAAGTGGAT
ATTAGTCCAAAAGCTCGGAATACCCAAGATACAATTCACAGACCATATGA
AGCTCAAGAAAAAGGAAGACCAAAATGTGGATACTTCAGTCCTTCTTAGA
AGGGGGAACAAAATACTCACAGTAGGTAGAGAGAAGGAGGGACTTGGGAG
GAAGAGAGTTTTTTTTTTTCTCTCCCCCCNCCCCCCTTCCCCTTCTCCCT
TTTTTTTTCTCTCTTTCTCCCCCCCCCCCCCCCCCTTTTCCCCCCCCCCT
TTTTTCTCCCTTCTCCCCCTCCTTCTTTCCCCCTCTTTCTTTTTTTTTCC
ACCCCCCCTTCTACCTTCCCCCTTTCTTTTCTTCCCCCTCTTCCCCTTCC
TCTCACCTCTTTTTTTTTTTCTCACCCTTTATTCTCCCGTTCCTTCCATT
TTTCCTCCCCCTCTCCCCTTATTTTTTTTCTTTCTTTACCCCTCCCTTTC
CTCTCTTTCCTTTTTCTTCCCATTAACCTACTTCCTCCTTCCATTTTTTT
CCGCGACACCTTTCCTTTTCTTAATCTCCCCTTTTTCTCTTCTTCTCCTT
TTTTTCTTCTCACCCTTTTTCTCGTCTTTTCCCTTCCCCCCTCATTTTTT
ATTCTTCCCCCCTCTTCTTTAACCCCTTTTTTCTCTTACCNATCTCGCGC
TTTCTCCTTT
CAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCGGAACATAGAGAGACT
CCATCTCCATTTCCCTCCCTCTCTCTCTCTGTCTCTCTCTCTCTCTGTCT
CTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTTTCT
CACACACACACACACCACACACAAAGGAGACAATTCTTACGTCACCACAC
AGCAACATCTATCACAAATCAAGAGTCACTAGAGTGGTGTGACTCTGGGA
AGAGAGTCTCCAAGCAGAGCCTCAGGCCCTCAGGGATCTTGAGTGTTTAC
AAAGATGGCATTTCATATTGGTTGGAGGAACGACAGGGCTGTTAAAGACC
TGGGTCTTGGACAGCCAGCTCATTGTTTGGGATAAGCTGATCCATCTGAC
ATTGCATGCATACCAAATTAACACTTAAATGTGAAAAATAGAGCTTCAAA
AATCAAAGAAACACACGCGCGTGCATACACAGGCATAAAACACAAAAAGG
AAAACAAGGACCAAGGAGACTAAATATGAGCAATTTCTTCTGCCGGAAAT
GAGAAAGTAAAACGCATAAACCACTAACTTGCGGAATATTTCTAAAATAC
CCACAATGCTCCAAAACAATGGTTAAATATGGGCAATACCCGGGTAAATA
TTGATAAAACTATCCCCAAAAATAATCCATTACACCCCGTCCATTATAAA
AAAAATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_g10.g1 MSMg01no381_g10.g1 CHROMAT_FILE:
MSMg01no381_g10.g1 PHD_FILE: MSMg01no381_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:48 2005
         (454 letters)



>mm_chr6_83673489_83674342
          Length = 854

 Score =  468 bits (242), Expect = e-136
 Identities = 265/280 (94%), Gaps = 14/280 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccggaacatagagagactccatctccatttccctccctctctctctctgtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 caggacagccggaacatagagagactccatctccatttccctccctctctctctctgtct 548

                                                                       
Query: 61  ctctctctctctg------tctctctctgtctc------tctctctctctctctc--tct 106
           |||||||||||||      ||||||||||||||      ||||||||||||||||  |||
Sbjct: 547 ctctctctctctgtctctctctctctctgtctctctctgtctctctctctctctctttct 488

                                                                       
Query: 107 ctctctctgtctctctttctcacacacacacacaccacacacaaaggagacaattcttac 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ctctctctgtctctctttctcacacacacacacaccacacacaaaggagacaattcttac 428

                                                                       
Query: 167 gtcaccacacagcaacatctatcacaaatcaagagtcactagagtggtgtgactctggga 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gtcaccacacagcaacatctatcacaaatcaagagtcactagagtggtgtgactctggga 368

                                                   
Query: 227 agagagtctccaagcagagcctcaggccctcagggatctt 266
           ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 367 agagagtctccaagcagagccacaggccctcagggatctt 328


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)