BAC Information

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BAC

Clone NameMSMg01-382C05
Chromosome6 (Build37)
Map Location 43,795,590 - 43,924,558
singlet/doubletdoublet
Overlap geneLOC665779
Upstream geneOlfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747, LOC546897
Downstream geneLOC100040210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382C05.T7 (MSMg01no382_c05.b1)MSMg01-382C05.TJ (MSMg01no382_c05.g1)
ACCAG486113AG486114
length757754
length of high quality
(start - end)		479 (23 - 501)571 (58 - 628)
definitionCHROMAT_FILE: MSMg01no382_c05.b1 PHD_FILE: MSMg01no382_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:47 2005CHROMAT_FILE: MSMg01no382_c05.g1 PHD_FILE: MSMg01no382_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,795,590 - 43,796,057)(43,924,006 - 43,924,558)
sequence
CGCTATACGACTCACTATATTCAGAGGATCCGCGGAATTCCAAGCTAGTG
TTCAAAAATATGGGAGGGGGAAAGATGTATGTTCTGTGAAATTTATACTT
CTTATCACTGTATACCAAGCATCTTATCACCATTTAGTAAGATCTTACTA
AATAGAACCAAGTTAATTATTACAAAAGAGGTAATAAATACATTATCATC
AATTTAGGCACCTCTGAACATGATGTGGTTTGGATGATAATGTCCCACAT
AGGTTCATATATTTGAATTCTTGGTCCCCAGTTAGTGAAACTATTGGGGG
GGGATTAGGAAGTGTGGCCTTGCTGGAGTAGATAGATATGTTACTCGGGT
TGGTCTTTGAGGGTTCAAAAGACCTTTATCATTCAAAGCATGCTATGCCT
TCTGGTTGCCATTCTGAAAGGTGAGCTTTCAGGGGCTGCTCCAGTCACCT
GATACCTGGAACCTCTATGTTATCATTATGTAATTTATCCTTCTGAAATG
CTAAACCTAAAATAAACTCTTTTCTATATGTTGCTTTGGGTGTAATGTCT
CATCACACTCACAGAAATGATACTCATTATGTGAGTAGTTTAAAAAACTA
CTTGTCCTGGGTGATTTAATGCCTAATTTCTAGGGTCCCTTCCCTCTGGT
TAAATTTGGTGTATTATTGGATTTGTGCTGCGAAACCATAATTGTATCGT
GCTGCGCCTGTGTTATCATCAAAATGGTCATATCTTTGTCTTTTCAATTG
AGATTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCAAATTTAAAGAAAGATAAAAAGAAACAATTTAAAAGAGATAT
GAGCATTTCAGAAAAACAACAAAAAAGGTAATTACATCTCTTTTTTTAGT
AACCAACAGGGAACCTCCTTCAAAGATCAGCAGAGATGAAAAGACCTTAA
TATCTTAACATTTTAATCTTATTGGCATTTATTGTAGGCTGTGATCAGAC
CCTCCATATGCAGTCTTTCCTGTTTCTCACAGTAAATTTGCTGGTAGAAG
AGAAAAGGAAATTTCTAAAAGAACTTCAGGCTCATGTGGTTTTTAGGCAT
TAATTCTATGAAACACTCAACGAAGTTCAATACAAGCATTGTTGAGTTTA
AGCAAGATGAGGGCTTGAGGAGGTGGCTCACAGGATAAAAAGAGCACTTG
CTATAAATGTGGAGGACTGGTGTCTGGATCCCTGGAACACACATAAATGG
CAGTCAAATGTGGGAGCCTACAATCACAACACTCTAGAGGCAGAGGCCAG
GTATCTCTAGGCATGCTGAGTAGATAAGCTTAGAACTGACATGCTCTGGG
TTCAGTAACTGACCCTGCCTCAGTAAGTAATGCATAGAGTAATCCAGGAA
AACACCTGCTATCAAGCGTACACCCACACACACACTCTCATACAGACAGA
CACACACCTTTTGCACATGTAAATATCATGTACTTTTATATTGGATGACC
CCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_c05.b1 MSMg01no382_c05.b1 CHROMAT_FILE:
MSMg01no382_c05.b1 PHD_FILE: MSMg01no382_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:47 2005
         (479 letters)



>mm_chr6_43795378_43796256
          Length = 879

 Score =  882 bits (456), Expect = 0.0
 Identities = 465/468 (99%), Gaps = 1/468 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  gaattccaagctagtgttcaaaaatatgggagggggaaagatgtatgttctgtgaaattt 72
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gaattccaagctagtgtttaaaaatatgggagggggaaagatgtatgttctgtgaaattt 272

                                                                       
Query: 73  atacttcttatcactgtataccaagcatcttatcaccatttagtaagatcttactaaata 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 atacttcttatcactgtataccaagcatcttatcaccatttagtaagatcttactaaata 332

                                                                       
Query: 133 gaaccaagttaattattacaaaagaggtaataaatacattatcatcaatttaggcacctc 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gaaccaagttaattattacaaaagaggtaataaatacattatcatcaatttaggcacctc 392

                                                                       
Query: 193 tgaacatgatgtggtttggatgataatgtcccacataggttcatatatttgaattcttgg 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tgaacatgatgtggtttggatgataatgtcccacataggttcatatatttgaattcttgg 452

                                                                       
Query: 253 tccccagttagtgaaactattgggggggg-attaggaagtgtggccttgctggagtagat 311
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 453 tccccagttagtgaaactattgggggggggattaggaagtgtggccttgctggagtagat 512

                                                                       
Query: 312 agatatgttactcgggttggtctttgagggttcaaaagacctttatcattcaaagcatgc 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 513 agatatgttactcgggttggtctttgagggttcaaaagacctttatcattcaaagcatgt 572

                                                                       
Query: 372 tatgccttctggttgccattctgaaaggtgagctttcaggggctgctccagtcacctgat 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tatgccttctggttgccattctgaaaggtgagctttcaggggctgctccagtcacctgat 632

                                                           
Query: 432 acctggaacctctatgttatcattatgtaatttatccttctgaaatgc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 acctggaacctctatgttatcattatgtaatttatccttctgaaatgc 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no382_c05.g1 MSMg01no382_c05.g1 CHROMAT_FILE:
MSMg01no382_c05.g1 PHD_FILE: MSMg01no382_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:47 2005
         (571 letters)



>mm_chr6_43924006_43924976
          Length = 971

 Score = 1046 bits (541), Expect = 0.0
 Identities = 550/553 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatttaaagaaagataaaaagaaacaatttaaaagagatatgagcatttcagaaaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 caaatttaaagaaagataaaaagaaacaatttaaaagagatatgagcatttcagaaaaac 494

                                                                       
Query: 61  aacaaaaaaggtaattacatctctttttttagtaaccaacagggaacctccttcaaagat 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 493 aacaaaaaaggtaattacatctctttttttagtaaccaacaaggaacctccttcaaagat 434

                                                                       
Query: 121 cagcagagatgaaaagaccttaatatcttaacattttaatcttattggcatttattgtag 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 433 cagcagagatgaaaagaccttaatatcttaacattttaatcttagtggcatttattgtag 374

                                                                       
Query: 181 gctgtgatcagaccctccatatgcagtctttcctgtttctcacagtaaatttgctggtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gctgtgatcagaccctccatatgcagtctttcctgtttctcacagtaaatttgctggtag 314

                                                                       
Query: 241 aagagaaaaggaaatttctaaaagaacttcaggctcatgtggtttttaggcattaattct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aagagaaaaggaaatttctaaaagaacttcaggctcatgtggtttttaggcattaattct 254

                                                                       
Query: 301 atgaaacactcaacgaagttcaatacaagcattgttgagtttaagcaagatgagggcttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 atgaaacactcaacgaagttcaatacaagcattgttgagtttaagcaagatgagggcttg 194

                                                                       
Query: 361 aggaggtggctcacaggataaaaagagcacttgctataaatgtggaggactggtgtctgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 aggaggtggctcacaggataaaaagagcacttgctataaatgtggaggactggtgtctgg 134

                                                                       
Query: 421 atccctggaacacacataaatggcagtcaaatgtgggagcctacaatcacaacactctag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 atccctggaacacacataaatggcagtcaaatgtgggagcctacaatcacaacactctag 74

                                                                       
Query: 481 aggcagaggccaggtatctctaggcatgctgagtagataagcttagaactgacatgctct 540
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 73  aggcagaggccaggtatctctaggcatgctgagtagatgagcttagaactgacatgctct 14

                        
Query: 541 gggttcagtaact 553
           |||||||||||||
Sbjct: 13  gggttcagtaact 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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