BAC Information

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BAC

Clone NameMSMg01-382E14
Chromosome6 (Build37)
Map Location 116,959,981 - 116,960,541
singlet/doubletsinglet
Overlap genenone
Upstream geneTmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439
Downstream geneCxcl12, LOC213422, EG640142, LOC100043777, LOC621462, EG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382E14.T7 (MSMg01no382_e14.b1)MSMg01-382E14.TJ (MSMg01no382_e14.g1)
ACCAG486225AG486226
length760731
length of high quality
(start - end)		572 (23 - 594)34 (82 - 115)
definitionCHROMAT_FILE: MSMg01no382_e14.b1 PHD_FILE: MSMg01no382_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:59 2005CHROMAT_FILE: MSMg01no382_e14.g1 PHD_FILE: MSMg01no382_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTATACGACTCACTATTTCGAGAGGATCCGCGGAATTCCACAATACTTG
TGTTGTGGAGTTTATTGGACCTGGATTTATGAGACTGGGCCAAACCATAT
TCTGTCACACTTCTTGAATGCTTGAGAATATGTAAATTCTCAAATACTGC
ATACAAATCCAACTGAGTTGGTTTTAGCTTCAATACTTTTGAAATACTTT
TATTTCCTTGCTATGATGATAATCAAGAGAAATATTTTGAAATTAGTGCT
ATGTTGATGATATTTCCTATTCCCCAAATTCTATAACTTTTTGCTTTACA
TGTTTTGAGAACATTACGGACATGTTTAAAATCCTTAAATCACCTTGGCA
TTGATCATGTCATAGAGGAGTGGCAAGCTTGATGTCTAACAAGAATCTGT
GATTTCAAGCCCCTTTTTCTGAATAAGCATTCTTTTACTTTGAGGTTTCT
GAGACCTTTTTATACTGTGGAAAATGTGTCGCCCAAAATGTAAATCCTTC
CTAAATACCTAGGAGGATGAAATTTTAAAGCAAAGACTTGACTTCAGCAA
GGGTGGAGATAAAGTAACTAAAGGATAGCAGGAAGTGAATGATATACGCA
GACGCAGGAGCAGCCTGGTCCCACAATGAGCAAAAGCCCTTCCTGATGTG
TGTGTGCATCCCTTCCAGGGAGCCCCTGCCAGCAGGAGGAAAGAAAGCTC
TTGAGCCCTGGGTGCCTCACTCTCCCATTGGTAAACATCCTTCCCTCAAA
TTCCACAGGG

ATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCATTCATTTGTGTGTGTGTGTGTA
AAAGTTTGTGTTCATATTCATGACCCAAATTANGAAGAGCTGTTTTTCTA
CNGANNAAGCAGATTTACNATTATCGAAAGGTGCTGGTTGNCATGTTGCT
TTTTAAAAGCTAGGAACCATTTAANNATTTCCCCTTTAACAANNAATTTC
TAAAAAAAATTNTCCAAAATCCAAAATTCTCNTTCAATATTTGGAAAAAT
AAACAAATTTTTTTTTAAATTTTGGAAACAAGCCCCCCCCCCTTCCCATC
TTCGGGGGGGGGGTGAATAGATAAAGATAATAATGGAAGAAAGAAGGAAA
GGGAGGTAATGTAGAGAGTGGGCTAGAATGGACAGGCGAGTGGCTACTTG
GCGGGGTGGGGGGTGGGCGGGGTGGGGGGGGGTGGGTGGGGGGCTGGGTG
GGGGAAACGGAAACGGAAGAGAGTGGAGGGGGGTGGGCGGGGGGGGGGGG
GGGGATGGGGGGGGGGAGGGGAGAAATAGAGAAGGGGGGGGCTGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAAANAAAAAAAAAGAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_e14.b1 MSMg01no382_e14.b1 CHROMAT_FILE:
MSMg01no382_e14.b1 PHD_FILE: MSMg01no382_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:59 2005
         (572 letters)



>mm_chr6_116959770_116960741
          Length = 972

 Score = 1015 bits (525), Expect = 0.0
 Identities = 552/561 (98%)
 Strand = Plus / Plus

                                                                       
Query: 12  gaattccacaatacttgtgttgtggagtttattggacctggatttatgagactgggccaa 71
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 212 gaattccacaatacttgtgttgtggagtttattggagctggatttatgagactgggccaa 271

                                                                       
Query: 72  accatattctgtcacacttcttgaatgcttgagaatatgtaaattctcaaatactgcata 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 accatattctgtcacacttcttgaatgcttgagaatatgtaaattctcaaatactgcata 331

                                                                       
Query: 132 caaatccaactgagttggttttagcttcaatacttttgaaatacttttatttccttgcta 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 caaatccaactgagttggttttagcttcaatacttttgaaatacttttatttccttgcta 391

                                                                       
Query: 192 tgatgataatcaagagaaatattttgaaattagtgctatgttgatgatatttcctattcc 251
           |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 392 tgatgataatcaagagaagtattttgaagttagtgctatgttgatgatatttcctattcc 451

                                                                       
Query: 252 ccaaattctataactttttgctttacatgttttgagaacattacggacatgtttaaaatc 311
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 452 ccaaattctataactttttgctttacatgttttgagaacattgcggacatgtttaaaatc 511

                                                                       
Query: 312 cttaaatcaccttggcattgatcatgtcatagaggagtggcaagcttgatgtctaacaag 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 cttaaatcaccttggcattgatcatgtcatagaggagtggcaagcttgatgtctaacaag 571

                                                                       
Query: 372 aatctgtgatttcaagcccctttttctgaataagcattcttttactttgaggtttctgag 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 572 aatctgtgatttcaagcccctttttctgaataagcattcttttactttgagatttctgag 631

                                                                       
Query: 432 acctttttatactgtggaaaatgtgtcgcccaaaatgtaaatccttcctaaatacctagg 491
           | ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 632 atctttttatactgtgggaaatgtgtcacccaaaatgtaaatccttcctaaatacctagg 691

                                                                       
Query: 492 aggatgaaattttaaagcaaagacttgacttcagcaagggtggagataaagtaactaaag 551
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 aagatgaaattttaaagcaaagacttgacttcagcaagggtggagataaagtaactaaag 751

                                
Query: 552 gatagcaggaagtgaatgata 572
           |||||||||||||||||||||
Sbjct: 752 gatagcaggaagtgaatgata 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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