Query= MSMg01no382_g24.b1 MSMg01no382_g24.b1 CHROMAT_FILE:
MSMg01no382_g24.b1 PHD_FILE: MSMg01no382_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:11 2005
(480 letters)
>mm_chr6_90707745_90708631
Length = 887
Score = 855 bits (442), Expect = 0.0
Identities = 471/484 (97%), Gaps = 7/484 (1%)
Strand = Plus / Plus
Query: 4 ggaattcaggggtgtcattttgtcagagtagggtga------ccatcttctcggatcagg 57
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 204 ggaattcaggggtgtcattttgtcagagtagggtgaccatctccatcttctcggatcagg 263
Query: 58 aggattttctgaggcctccatatattagagaccctgccccacacaaggccacactggaga 117
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 264 aggattttctgaggccttcatatattagagaccctgccccacataaggccacactggaga 323
Query: 118 ggcctctctattgtcctagctggctgtgcccatctccttaaggctacatccaagctctgt 177
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 324 ggcctctctattgtcctagctggctgtgcccatctccttcaggctacatccaagctctgt 383
Query: 178 atccagggggttttcaccttacaccccaacccccatattggcactctgggggggg-ggtg 236
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 384 atccagggagttttcaccttacaccccaacccccatattggcactctggggggggcagtg 443
Query: 237 caattgtcccagtctgaattctcaccgttgctatcggtagcctgcactgtctcccttgag 296
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 444 caattgtcccagtctgaattctcactgttgctatcggtagcctgcactgtctcccttgag 503
Query: 297 gacagtgtctcctatctagacaatggtcatcattattaccatgtctctccagccctacag 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gacagtgtctcctatctagacaatggtcatcattattaccatgtctctccagccctacag 563
Query: 357 tggtctcacttcttcatgaaagtggtgtgactgtctagaaacctcatgtatagtctctct 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tggtctcacttcttcatgaaagtggtgtgactgtctagaaacctcatgtatagtctctct 623
Query: 417 acctcaaaactatgcatgtcctcctcaggggctggccccactcacttccttcctcactcc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acctcaaaactatgcatgtcctcctcaggggctggccccactcacttccttcctcactcc 683
Query: 477 tgct 480
||||
Sbjct: 684 tgct 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 887
Length adjustment: 10
Effective length of query: 470
Effective length of database: 877
Effective search space: 412190
Effective search space used: 412190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no382_g24.g1 MSMg01no382_g24.g1 CHROMAT_FILE:
MSMg01no382_g24.g1 PHD_FILE: MSMg01no382_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:11 2005
(457 letters)
>mm_chr6_90880894_90881751
Length = 858
Score = 847 bits (438), Expect = 0.0
Identities = 453/458 (98%), Gaps = 1/458 (0%)
Strand = Plus / Minus
Query: 1 tgctctcaccccttgaagga-tcctcaggatctcccagtccttagcatctgcttagaatg 59
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tgctctcaccccttgaaggactcctcaggatctcccagtccttagcatctgcttagaatg 599
Query: 60 gtgacatcataaaattgcccttccacaccccgtgtcttgctgtgtcccttctacttgctc 119
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 598 gtgacatcataaaattgcccttccacaccccatgtcttgctatgtcccttctacttgctc 539
Query: 120 acaatatactggcttttgaagactcaagtgctcctgacacctcctgagcctttcagctgt 179
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 acaatatactgacttttgaagactcaagtgctcctgacacctcctgagcctttcagctgt 479
Query: 180 cagtggatcttggaaactaacttctttagcattgtgtactcccagtctcagcttgcctct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cagtggatcttggaaactaacttctttagcattgtgtactcccagtctcagcttgcctct 419
Query: 240 accatgcctggctcctccctggtctgctgtacagagctgaccagaatctggatggagtca 299
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 418 accatgcctggctcctccctggtctgctgtacagagctgacgagaatctggatggagtca 359
Query: 300 cttatgcccctctctgcttggcctttcacctcattcaggaactgctaaaaactgtaagaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 cttatgcccctctctgcttggcctttcacctcattcaggaactgctaaaaactgtaagaa 299
Query: 360 ctgtcaccaccaccctgctgacatcacagcacattgctctttttcctgtaatgtgcacca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ctgtcaccaccaccctgctgacatcacagcacattgctctttttcctgtaatgtgcacca 239
Query: 420 ccaccaaatcctccacagagtgcaggagggaaaggacc 457
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ccaccaaatcctccacagagtgcaggagggaaaggacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 858
Length adjustment: 10
Effective length of query: 447
Effective length of database: 848
Effective search space: 379056
Effective search space used: 379056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
