Query= MSMg01no382_i19.b1 MSMg01no382_i19.b1 CHROMAT_FILE:
MSMg01no382_i19.b1 PHD_FILE: MSMg01no382_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:19 2005
(531 letters)
>mm_chr6_73199789_73200719
Length = 931
Score = 899 bits (465), Expect = 0.0
Identities = 507/531 (95%), Gaps = 16/531 (3%)
Strand = Plus / Minus
Query: 1 tttaaacattagtcacttgtaaccttaatactaatactactaatacaaaaatatcctagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 tttaaacattagtcacttgtaaccttaatactaatactactaatacaaaaatatcctagt 768
Query: 61 ttagatcttagatccctcagagttttaacagcatgcctcaggtctgagatgactccagca 120
|||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 767 ttagatcttagatccctcagagttttaacagcatgc----------------ctccagca 724
Query: 121 acagaaagctaaatctcttctaggccttcagtcttgcagtctaggatgaaagaccttcag 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 723 acagaaagctaaatctcttctaggccttcagtcttgcagtctaggatgaaagacgttcag 664
Query: 181 ttctgtagggtgagggttgctaaggatgaatttaaggaaccaaatcacatagacattcct 240
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 663 ttctgtggggtgagggttgctaaggatgaatttaaggaaccaaatcacctagacattcct 604
Query: 241 cttctggaaacacctctattaacacagcagaccttctggatggaggctgggtcttggatc 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 603 cttctggaaacacctctattaacacagcagaccttctggatggaggctgggtcttggacc 544
Query: 301 agaaagacctcagcagagaaagacattggtgcataggtgagtggtccagaaaactagcta 360
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 543 agaaagacctcagcagagagagacattggtgcataggtgagtgttccagaaaactagcta 484
Query: 361 atgtgcacatctggtgttccacatcttaacccacaaacgattccaaataagctggcttag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 atgtgcacatctggtgttccacatcttaacccacaaacgattccaaataagctggcttag 424
Query: 421 gccatacccaacacacaagtgttcaaactctaccagccacagcacttactggcacaacta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gccatacccaacacacaagtgttcaaactctaccagccacagcacttactggcacaacta 364
Query: 481 atgtcttccttcccttctatctggagcacattgaggtatccttttaatcag 531
||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 363 atgccttccttcccttctatttggagcacattgaggtatccttttaatcag 313
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no382_i19.g1 MSMg01no382_i19.g1 CHROMAT_FILE:
MSMg01no382_i19.g1 PHD_FILE: MSMg01no382_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:19 2005
(459 letters)
>mm_chr6_72979096_72979953
Length = 858
Score = 797 bits (412), Expect = 0.0
Identities = 448/460 (97%), Gaps = 3/460 (0%)
Strand = Plus / Plus
Query: 1 agtattctcctagcagccttcagatg-agaatgtagaactctcagctttgcttgcaccat 59
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 201 agtattctcctagcagccttcagatgaag-atgtagaactctcagctttgcttgcaccat 259
Query: 60 gcctgcccggatgctgccatgctcccaccttgatgataatggactgaaactctgaacctg 119
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 260 gcctgcccggatgctgccatgctcccaccttgatgataacagactgaaactctgaacctg 319
Query: 120 taagccagccccaattaaatgctgtcctttataagagttgccttggtcatggtgtctctt 179
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 320 taagccagtcccaattaaatgccgtcctttataagagttgccttggtcatggtgtctgtt 379
Query: 180 cacagcagtaaaaccctgactaagacaaccacattgcttaaaaggggcagttactcaacc 239
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 380 cacagcagtaaaaccctaactaagacaaccacattgcttaaaagggacagttactcaacc 439
Query: 240 taagcagaacatgctactttccactttgatacaaagattttctctagctaaaggcaactt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 taagcagaacatgctactttccactttgatacaaagattttctctagctaaaggcaactt 499
Query: 300 gcaaacagatggaagacagatttcaaacttcttccttcctaaaaacaggagttaaaaaac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gcaaacagatggaagacagatttcaaacttcttccttcctaaaaacaggagttaaaaaac 559
Query: 360 tctcacatgaaagaaggccttctggtatcaggagaagaaaaccgctcttccggggggatc 419
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||
Sbjct: 560 tctcacatgaaagaaggccttctggtgtcaggagaacaaaaccgctcttccggggg-atc 618
Query: 420 tggtagaaagagaccttgttaaaatacaatagtcctgtgg 459
||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tggtagaaagagaccttgttaaaatacaatagtcctgtgg 658
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 858
Length adjustment: 10
Effective length of query: 449
Effective length of database: 848
Effective search space: 380752
Effective search space used: 380752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
