BAC Information

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BAC

Clone NameMSMg01-382K22
Chromosome6 (Build37)
Map Location 35,011,861 - 35,012,347
singlet/doubletsinglet
Overlap geneCnot4
Upstream geneLrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik
Downstream geneNup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312, LOC100039327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382K22.T7 (MSMg01no382_k22.b1)MSMg01-382K22.TJ (MSMg01no382_k22.g1)
ACCAG486529AG486530
length764728
length of high quality
(start - end)		498 (35 - 532)59 (113 - 171)
definitionCHROMAT_FILE: MSMg01no382_k22.b1 PHD_FILE: MSMg01no382_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:30 2005CHROMAT_FILE: MSMg01no382_k22.g1 PHD_FILE: MSMg01no382_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATGGC
ATTACTTGGTACTTCTAAAACTCAAGAAAAAAAAGGCGTAGTTTGTCAAA
AATGTACAAGATGCTCTCAAGCAAAGCTTGTTAAAGTATAAATAGGTATT
GAGATACCTGTGAACTCTGAAATTGTATGCAAAAATTTACATGTCCATTA
TTTTTCTATGGAGGCTTTGCTGTGCTGCCAGCAGAGGGCTAGAGGTAAGT
GGTAGAGAACAGGGACTCTCAGTGTGTGCACAGCAGCCACAAAAGTGGCC
TGCATTTTATGGGCCTCCCGAAAGACTTTCTTTTACTACACACAAATGAC
TTACAATCTCCATTTTTATTTTTGCATAAAACCCAGAATTATTTATTAAT
TAAATGGGTGACAGTCTGCTAAGCTTGGCTACTTGATATTAAAATTGGCC
AATTGCTAGGGGTTTGGTTTTCTGTTTTGGATTCTGTCTTTTAGTTTCTG
TCAGTGTCTGACCTGTTCTGACTTTTATGTAGTTAGTACACATGTGCATA
AATGGTGGAGAGCCACTAAGTGACCTAGGGGATCTTACCCCTCTTTAGTT
CACTGGATTTATTTTAAAAGTTAGACAAAATGTAAGGAAATTGCTCCTAC
CCCACTTCCAAGGAACTACTTACCAAAATCCTTGGTAAAAATGAGGCTGT
TTATTATTACCTTTGCAGGGGGATAAAAATCCAAAAGTCCGGCAAATTAC
CCCCTGAACCTCCA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCC
GGATTCCTGTTGCTTTTGCTTTATTTTGTTTGCTTGGTGTTTTCTTTGTC
TTTTTCCTTTCTTTTTGTTGTTGTTGTTAGTTGGTTTTGTTTTTTCTTTT
TTATTGTTTTTTGGGGGTGNATGATTGGTTTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNTTTNNTNNTNTTN
NTNNTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTNNNNNTTTCTTCTTT
TTTTCCTCCCCTCNTCTCNCCCCCCCTCCCCCCCTCCCCCCCCCCCCTCT
TCCCCCCCCTCCCCCCCCTCCNTCNTTTCCCTCCCCCCCCCCCTCTCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTCCCCCCCCCTCCCCCCCCC
TCCCCCCCCTCCCCCCCCCCCCCCCCCTCCCCCCCCTCCCCCCCTCCCCC
CCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCTTCCTCCC
CCCTTCTCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCC
CCCCCCCCCCCCCCCTCTTCCCCCCCCCCCCCCCCCCCCTCCTCCCCCCC
CCTCCCCCCCCCCCCACCCCACCCCCCCCCCCCCCCCTCCCCCCCCCCTC
TCCCCCATCCCTCCCCCTCCCCCCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_k22.b1 MSMg01no382_k22.b1 CHROMAT_FILE:
MSMg01no382_k22.b1 PHD_FILE: MSMg01no382_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:30 2005
         (498 letters)



>mm_chr6_35011657_35012547
          Length = 891

 Score =  917 bits (474), Expect = 0.0
 Identities = 486/494 (98%), Gaps = 7/494 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatggcattacttggtacttctaaaactcaagaaaaaaaaggcgtagtttgtca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 gaattccatggcattacttggtacttctaaaactcaagaaaaaaaaggcgtagtttgtca 632

                                                                       
Query: 65  aaaatgtacaagatgctctcaagcaaagcttgttaaagtataaataggtattgagatacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aaaatgtacaagatgctctcaagcaaagcttgttaaagtataaataggtattgagatacc 572

                                                                       
Query: 125 tgtgaactctgaaattgtatgcaaaaatttacatgtccattatttttctatggaggcttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tgtgaactctgaaattgtatgcaaaaatttacatgtccattatttttctatggaggcttt 512

                                                                       
Query: 185 gctgtgctgccagcagagggctagaggtaagtggtagagaacagggactctcagtgtgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gctgtgctgccagcagagggctagaggtaagtggtagagaacagggactctcagtgtgtg 452

                                                                       
Query: 245 cacagcagccacaaaagtggcctgcattttatgggcctcccgaaagactttcttttacta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cacagcagccacaaaagtggcctgcattttatgggcctcccgaaagactttcttttacta 392

                                                                       
Query: 305 cacacaaatgacttacaatctccatttttatttttgcataaaacccagaattatttatta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 cacacaaatgacttacaatctccatttttatttttgcataaaacccagaattatttatta 332

                                                                       
Query: 365 attaaatgggtgacagtctgctaagcttggctacttgatattaaaattggccaattgcta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 attaaatgggtgacagtctgctaagcttggctacttgatattaaaattggccaattgcta 272

                                                                       
Query: 425 ggggtttggttttctgttttggattctgtcttttagtttctgtcagtgtctgacctgttc 484
           |||||||||||||||||||       ||||||||||||||||||||||||||| ||||||
Sbjct: 271 ggggtttggttttctgttt-------tgtcttttagtttctgtcagtgtctgaactgttc 219

                         
Query: 485 tgacttttatgtag 498
           ||||||||||||||
Sbjct: 218 tgacttttatgtag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 891
Length adjustment: 10
Effective length of query: 488
Effective length of database: 881
Effective search space:   429928
Effective search space used:   429928
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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