BAC Information

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BAC

Clone NameMSMg01-383F03
Chromosome6 (Build37)
Map Location 132,865,599 - 132,866,056
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639802, EG114600, Prb1, LOC631126, LOC100043878, Prpmp5, EG667929, EG381818, Prh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125
Downstream geneTas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618, 5530400C23Rik, EG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383F03.T7 (MSMg01no383_f03.b1)MSMg01-383F03.TJ (MSMg01no383_f03.g1)
ACCAG487017AG487018
length764745
length of high quality
(start - end)		464 (38 - 501)515 (70 - 584)
definitionCHROMAT_FILE: MSMg01no383_f03.b1 PHD_FILE: MSMg01no383_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:21 2005CHROMAT_FILE: MSMg01no383_f03.g1 PHD_FILE: MSMg01no383_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCT
GCCTGAACTGCTTTTGTGTAACAAAAAGGACTGGAAAGGGCAAGGTAGGG
AAGGATAAAAATATAATTTACTGTGGATATGTACTAAGGGAACACCTAAA
ATCTAATTCCTTAAGTTGACCTCTGACATGGACATGCAAATCCCTAAACC
CATCTCTTTGCACTAGAACAGTACAGAGAAACAGAATTTTTGAGACCAAA
GCAGTTCTTTTGACACAGGACCATCAAATATGTCATAAGAACATTAAATG
TGTATTCATGTGGTACACTACTCTTCAGATAAGAGTGCCAGAGGGAGGGG
CATGTCTCCACATAAGTGTAGATTTTGAACTGACACTATTATTTGAGAAT
CAAACAAGATCAAGCAGGGGTGACTGAAGATCTGTGAATTACCTGCAGCT
CAATGAAGATTTACTGGGTTTATAATTGTTTACATACTTTGAATACATAG
TTGAGACACAAAGATTCATTGTCACCAAAAATTTATGTTGCTTCATTACC
TGTAAAGATAGAGTTGTTATTCATGCATCAAAACATGGAGACTCTGAACC
TGGCCCTTCTCTGTAGTTAATGAATAAAAGATAAAATAACGCACGTCCAA
AATAGTATTTTCTGTCCTAATCTGAAGTATACACTAGCACACGCTGTTTT
ACGGTGCGAAATAACTTATGCGTAACCCCCCAAAGCTGGGCCCCCATATT
GGGGGACATGAGAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTGTTTAGTTCTATATAACATTTCTTGATT
GGGTTTTTCCATTTTTTGGATGTTAGCATCTTGTATTCTTAAAATATTTT
AGTTATTAAAATAAGATGTAGGTTCAGTGAAATTTTTTTTCCTCCAATCT
GTAGGTTGTCAATTTTTCCTATTGGCTATGTCCTTTGCCTTTCAGAAGTT
TTTTCAGTTTCATAAGGTCCCATTTATCAATTTTTTATCTTAAGACCTGA
GCTTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCA
CAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGA
TCTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGA
GCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATC
ACTGGAAAGAGAGGCCCATTGGACATGCAAAATTTATATGCCCCAGTACA
GGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAATGGNNN
NTNNNTNNNTNNNNTTTTTTTTNNTTTTTTNTTNTTTTTTTTTTTTTTTG
TTTGTTTTTTTTTATNTNTTTTTTTTTTCTTTTGTTTTTTTTTTTTTTGT
TGGTTTTTTTTTGTTTTTTTTTTGTTTTGNTTTTTTTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_f03.b1 MSMg01no383_f03.b1 CHROMAT_FILE:
MSMg01no383_f03.b1 PHD_FILE: MSMg01no383_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:21 2005
         (464 letters)



>mm_chr6_132865395_132866258
          Length = 864

 Score =  847 bits (438), Expect = 0.0
 Identities = 453/458 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccctgcctgaactgcttttgtgtaacaaaaaggactggaaagggcaaggtaggga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gaattccctgcctgaactgcttttgtgtaacaaaaaggactggaaagggcaaggtaggga 603

                                                                       
Query: 65  aggataaaaatataatttactgtggatatgtactaagggaacacctaaaatctaattcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 aggataaaaatataatttactgtggatatgtactaagggaacacctaaaatctaattcct 543

                                                                       
Query: 125 taagttgacctctgacatggacatgcaaatccctaaacccatctctttgcactagaacag 184
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 taagttggcctctgacatggacatgcaaatccctaaacccatctctttgcactagaacag 483

                                                                       
Query: 185 tacagagaaacagaatttttgagaccaaagcagttcttttgacacaggaccatcaaatat 244
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tactgagaaacagaatttttgagaccaaagcagttcttttgacacaggaccatcaaatat 423

                                                                       
Query: 245 gtcataagaacattaaatgtgtattcatgtggtacactactcttcagataagagtgccag 304
            | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 422 attataagaacattaaatgtgtattcatgtggtacactactctttagataagagtgccag 363

                                                                       
Query: 305 agggaggggcatgtctccacataagtgtagattttgaactgacactattatttgagaatc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 agggaggggcatgtctccacataagtgtagattttgaactgacactattatttgagaatc 303

                                                                       
Query: 365 aaacaagatcaagcaggggtgactgaagatctgtgaattacctgcagctcaatgaagatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aaacaagatcaagcaggggtgactgaagatctgtgaattacctgcagctcaatgaagatt 243

                                                 
Query: 425 tactgggtttataattgtttacatactttgaatacata 462
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tactgggtttataattgtttacatactttgaatacata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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