BAC Information

Click to search

BAC

Clone NameMSMg01-383O22
Chromosome6 (Build37)
Map Location 52,273,749 - 52,372,046
singlet/doubletdoublet
Overlap geneEG666487
Upstream geneEG625167, Nfe2l3, Hnrpa2b1, Cbx3, Snx10, LOC100041820, Skap2, LOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1
Downstream gene1700094M24Rik, EG545841, Hibadh, Tax1bp1, Jazf1, LOC666259, LOC666516, D430007I03
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383O22.T7 (MSMg01no383_o22.b1)MSMg01-383O22.TJ (MSMg01no383_o22.g1)
ACCAG487487AG487488
length789770
length of high quality
(start - end)		460 (45 - 504)423 (73 - 495)
definitionCHROMAT_FILE: MSMg01no383_o22.b1 PHD_FILE: MSMg01no383_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:06 2005CHROMAT_FILE: MSMg01no383_o22.g1 PHD_FILE: MSMg01no383_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,273,749 - 52,274,204)(52,371,627 - 52,372,046)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAGGTTCCCACGCTCCAGTTTACACCACTAGGAAGTAAGGGGTGCT
TGTATTCCATGTGACTAGCACTCAGCGGACTCGGGGAAATGCGGCTCCTG
GCTGGACACTACCTCCTAATAGCTGCACAGGTGGCACCCATTATTCTCCT
CAGGCCATTTTGTTTTTTTTCTGTTGTATGAAATGGACATGAGCCCAGGC
TCCATGCAGCTGATGTCTCTTTCTTTCCTTCCTCCATTTCCCCAGCACTT
TCTCCTTTGCACTGTCTCTACTTAACTTTGGAAAGTTCAGTCAGAGAGGA
TTTTATTCTGCAAATAGTTAGGACCTACTATGTGTTCGTCATGTGTGATG
TGTGCTTTTAAAACGGGAGAGCAGATCATCAATTCTTATCCCCTCCTCAC
CATTCCCAATATGTGTCATAACGGGAAACAAGGGTGGGAATGTTGAAGGA
GAGAGAATGGGATGGGAACATATTTGGGGGACAGAGAAACTGTTTGGGGA
ATGTGTGTTGCACTTTCCTCCCATTATTTCTATCTTTTCACGATGTTGCT
GGAGTGTGCTTTGGTTGTCGCCTGTTTGTCTTTCGTTGTGTCTTCATGAG
TCTTTACCTCGTCGTTCCTTTATTTGCTTCCCCTCTTTTTCTACCTTTTC
TTTCTATTTCGTTTCTCCATTTGTTTTCACCATCTTCGCGTCGCCCTTGC
CGGTTTGCATTTGATTCTCTTTCTCATTTCTTAATATCG

GATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACCGGCTACTGTGATCACCATTCCACCA
TTCTTTTGGGTCAGAAATTTGGGGAGGACTCAGATACACGGCCATCTAGG
CAGGTTATATCGGGATTGTAGTCTGGTGACTGGTAAAGCTGAAATGGAAA
AGAGAGCTGAACAGCTTTGAGATGCAGTGAGTGCCATGTCTGGGTCTATG
GCTCCTCTCTACATCTTAGCTCAGGCTGCCTGACAACACGGAGACCTCAT
GGTCAGAATTTAAACACGTCTTCCAAAAAGCAAGGAAACTGAGTTGTAGT
GTGTAGGTTTGGGAGTCACATGATATCGTTGTCACCAACCTATATAAATC
AAACAGTCATGAAACCCATCTTTTAACAGGCAAGGCAAAGGATTTATGGA
TATATTTCAAACCTACCACAGTAAGAAATTAACATCAGTAGGTTTAGTGT
TTAATCAGATGGATGTGGGAGTGAGGTCAGGGGGCCAAATATGATCTCCA
CGAGGGAAAATTGCTAAACACGGTTTGGCTATTCAGAAAAAATTTTTTGG
GTAAGAGTAAATTTTGGAACCCCTTTTTTATAATTGCCCAAAAGGGGTAA
AAAAGGTATGCTTTCCCCCCTTACAAGGTTGTAGGACTCCCCTCCGCACC
TGGATGTTCCGCTTACAATAAAAATGGGCTTTGGGGGCTTTCTCTTTCCG
TCTTTTTTTTTAATTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_o22.b1 MSMg01no383_o22.b1 CHROMAT_FILE:
MSMg01no383_o22.b1 PHD_FILE: MSMg01no383_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:06 2005
         (460 letters)



>mm_chr6_52273545_52274404
          Length = 860

 Score =  882 bits (456), Expect = 0.0
 Identities = 456/456 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaggttcccacgctccagtttacaccactaggaagtaaggggtgcttgtattcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaggttcccacgctccagtttacaccactaggaagtaaggggtgcttgtattcc 264

                                                                       
Query: 65  atgtgactagcactcagcggactcggggaaatgcggctcctggctggacactacctccta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgtgactagcactcagcggactcggggaaatgcggctcctggctggacactacctccta 324

                                                                       
Query: 125 atagctgcacaggtggcacccattattctcctcaggccattttgttttttttctgttgta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atagctgcacaggtggcacccattattctcctcaggccattttgttttttttctgttgta 384

                                                                       
Query: 185 tgaaatggacatgagcccaggctccatgcagctgatgtctctttctttccttcctccatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgaaatggacatgagcccaggctccatgcagctgatgtctctttctttccttcctccatt 444

                                                                       
Query: 245 tccccagcactttctcctttgcactgtctctacttaactttggaaagttcagtcagagag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tccccagcactttctcctttgcactgtctctacttaactttggaaagttcagtcagagag 504

                                                                       
Query: 305 gattttattctgcaaatagttaggacctactatgtgttcgtcatgtgtgatgtgtgcttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gattttattctgcaaatagttaggacctactatgtgttcgtcatgtgtgatgtgtgcttt 564

                                                                       
Query: 365 taaaacgggagagcagatcatcaattcttatcccctcctcaccattcccaatatgtgtca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taaaacgggagagcagatcatcaattcttatcccctcctcaccattcccaatatgtgtca 624

                                               
Query: 425 taacgggaaacaagggtgggaatgttgaaggagaga 460
           ||||||||||||||||||||||||||||||||||||
Sbjct: 625 taacgggaaacaagggtgggaatgttgaaggagaga 660


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no383_o22.g1 MSMg01no383_o22.g1 CHROMAT_FILE:
MSMg01no383_o22.g1 PHD_FILE: MSMg01no383_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:06 2005
         (423 letters)



>mm_chr6_52371424_52372246
          Length = 823

 Score =  774 bits (400), Expect = 0.0
 Identities = 415/420 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggctactgtgatcaccattccaccattcttttgggtcagaaatttggggaggactcagat 63
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 623 ggctactgtgatcaccattccaccattcttttgggtcaggaatttggggaggactcagat 564

                                                                       
Query: 64  acacggccatctaggcaggttatatcgggattgtagtctggtgactggtaaagctgaaat 123
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 563 acacggccatctaggcaggttatatcgggattgtagtctggtgactggtagagctgaaat 504

                                                                       
Query: 124 ggaaaagagagctgaacagctttgagatgcagtgagtgccatgtctgggtctatggctcc 183
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 503 ggaaaagagagctgaacagctttgagatgcagtgagtgccgtgtctgggtctatggctcc 444

                                                                       
Query: 184 tctctacatcttagctcaggctgcctgacaacacggagacctcatggtcagaatttaaac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tctctacatcttagctcaggctgcctgacaacacggagacctcatggtcagaatttaaac 384

                                                                       
Query: 244 acgtcttccaaaaagcaaggaaactgagttgtagtgtgtaggtttgggagtcacatgata 303
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 383 acgtcttccaaaaagcaaggaaactgagttgtagtatgtaggtttgggagtcacatgata 324

                                                                       
Query: 304 tcgttgtcaccaacctatataaatcaaacagtcatgaaacccatcttttaacaggcaagg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tcgttgtcaccaacctatataaatcaaacagtcatgaaacccatcttttaacaggcaagg 264

                                                                       
Query: 364 caaaggatttatggatatatttcaaacctaccacagtaagaaattaacatcagtaggttt 423
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cacaggatttatggatatatttcaaacctaccacagtaagaaattaacatcagtaggttt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |