Query= MSMg01no384_d10.b1 MSMg01no384_d10.b1 CHROMAT_FILE:
MSMg01no384_d10.b1 PHD_FILE: MSMg01no384_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:27 2005
(518 letters)
>mm_chr6_144415688_144416604
Length = 917
Score = 924 bits (478), Expect = 0.0
Identities = 508/526 (96%), Gaps = 14/526 (2%)
Strand = Plus / Plus
Query: 5 gaattcattatgttatctgggtacactgcatttttttctaaatgcagcccccc------- 57
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gaattcattatgttatctgggtacactgcatttttttctaaatgcagccccccacccccc 253
Query: 58 -----cccccgcccaactttaggatcacaactatgttttctactttctacctcttgtaac 112
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 254 ccccacccccgcccaactttaggatcacaactatgttttctactttctacctcttgt--c 311
Query: 113 tgtgactaagttcaccaacaaaattttaataatgagccttcctgtgattgaaagacacaa 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tgtgactaagttcaccaacaaaattttaataatgagccttcctgtgattgaaagacacaa 371
Query: 173 agagtgaaaagtgaaattattccccacacatggactgtattttcaaatgaccctggatgg 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 agagtgaaaagtgaaattattccccacacatggactgtattttcaaatgaccctggatgg 431
Query: 233 ataaaattacgtgtttaggatcctcatttcacgtggtaaatccatttacatatcactttt 292
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 432 ataaaattacgtgtttaggatcttcatttcacgtggtaaatccatttacatatcactttt 491
Query: 293 tatgcactgtttagaataattttaaaaagtcatcttaaaaacattaaatcagccgggcat 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tatgcactgtttagaataattttaaaaagtcatcttaaaaacattaaatcagccgggcat 551
Query: 353 ggtggggcacgcctttaatcccagcacttgggaggcagaggcaggtggatttctgagttc 412
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ggtggtgcacgcctttaatcccagcacttgggaggcagaggcaggtggatttctgagttc 611
Query: 413 aatgccagcctggtctacagagtgagttccaggacagccagggctacacagagaaaccct 472
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 aaggccagcctggtctacagagtgagttccaggacagccagggctacacagagaaaccct 671
Query: 473 gtcttgaaaaaccaaaaacaaaaaaaaccccaaaaaaccaaaacca 518
||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 672 gtcttgaaaaaccaaaaacaaaaaaaaacccaaaaaaccaaaacca 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 917
Length adjustment: 10
Effective length of query: 508
Effective length of database: 907
Effective search space: 460756
Effective search space used: 460756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_d10.g1 MSMg01no384_d10.g1 CHROMAT_FILE:
MSMg01no384_d10.g1 PHD_FILE: MSMg01no384_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:28 2005
(481 letters)
>mm_chr6_144610034_144610919
Length = 886
Score = 886 bits (458), Expect = 0.0
Identities = 475/484 (98%), Gaps = 7/484 (1%)
Strand = Plus / Minus
Query: 4 agtggaaagttagaaagatccatgggtcaatgtcacaatggaatatgagattattctgta 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 686 agtggaaagttagaaagatccatgggtcaatgtcacaatggaatatgagattattctata 627
Query: 64 aaataccacagcctgccacag------atgcctgggaagggacctcagtgaacagtgagg 117
||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 626 aaataccacagcctgccacaggcttatatgcctgggaagggacctcagtgaacagtgagg 567
Query: 118 ggtgagggcaagattgggaaacagtgtctgatttcttgggaaggggtgtatgtgcatgct 177
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 566 ggtgagggcaagattgggaaacagtgtctgatttcttgggaaggggtgtatgcgcatgct 507
Query: 178 attttgatgtttgaggaacacagggttgagtctgatttactccttacctgcaagtcactg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 attttgatgtttgaggaacacagggttgagtctgatttactccttacctgcaagtcactg 447
Query: 238 acttaagaaggcttactatggaaccagtgctaggtggccttttagaatgtttcagacctt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 acttaagaaggcttactatggaaccagtgctaggtggccttttagaatgtttcagacctt 387
Query: 298 gtttaaaacacatgacaatttccattctctcctcaccagatttttttaaactctagacat 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gtttaaaacacatgacaatttccattctctcctcaccagatttttttaaactctagacat 327
Query: 358 cagagcatggttttccaatagttcaagtttatgcacagaatgcctaagcaggtgcgtttt 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 326 cagagcatggttttccaatagttcaagtttatgcacagaatgcctaagcaggtgcg-ttt 268
Query: 418 tggcacaaacacaaaggattctgggcccaattaatcaaacaagggggtgaatgaagaaat 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tggcacaaacacaaaggattctgggcccaattaatcaaacaagggggtgaatgaagaaat 208
Query: 478 tgta 481
||||
Sbjct: 207 tgta 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 886
Length adjustment: 10
Effective length of query: 471
Effective length of database: 876
Effective search space: 412596
Effective search space used: 412596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
