BAC Information

Click to search

BAC

Clone NameMSMg01-384E05
Chromosome6 (Build37)
Map Location 81,530,826 - 81,531,171
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043390, LOC100042991
Downstream geneLOC232143, 1700009C05Rik, AW146020, Mrpl19, Tmem166, EG622198, Tacr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384E05.T7 (MSMg01no384_e05.b1)MSMg01-384E05.TJ (MSMg01no384_e05.g1)
ACCAG487741AG487742
length747742
length of high quality
(start - end)		571 (36 - 606)544 (67 - 610)
definitionCHROMAT_FILE: MSMg01no384_e05.b1 PHD_FILE: MSMg01no384_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:31 2005CHROMAT_FILE: MSMg01no384_e05.g1 PHD_FILE: MSMg01no384_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAAC
TGACGAATACCGAATAACTGAGAAGCACCTAAAGAAATGTTCAACATCCT
GAGTCATCAGGGAAATGCATATCAAAACAATCCTGAGATTGCACCTCACA
CCAGTCAGAATGGCTAAGATAAAAAACTCAGGTGACAGCAGAGGCTGGCG
AGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAGC
TGGTAAAACCACTCTGGAAATTAGTTTGGCAGTTCCTCAGAAAATTGGAC
ATACTACCTGAGGACCGACTAACACACTCCTGGGCATATACCCAGAATAT
GCTCCAACATGTAATAAGGACACATGCTCCACTATGTTCATAGCAGCCTT
ATTTATAGCAGCCAGAAGCTGGAAAGAACCCAGATGTCCCTCAACAGAGG
AATGGATACAGAAAATATGGTACATTTACACAATGGATTAATACTCACCT
ATTAAAAACAATTAATTTATGAAATTCTTAGGTAAAAGGATGGAAGAAGA
ATATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACACACATGCTATG
CACTCACTGATAAGTGGATATTAGCCCAGAAGCTCAGAATATCCCAGATA
CAATTCACAAACGATATTGAACTTAATAAGAAAGAAGACCAAAGGTGGAT
ACCTTGATCCTTCTTAAAAAGGGGGACAAATACCCCCGGGTAGGAGT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGTTGTCTGAAGAACTCAGCACTGGTAGCTTTTT
TTTTTCTGAAATGACAGGGAGAATGGCAAATGATCTTGAAATGGTATTAG
AAGCTACACTTCAATGTATCAGTGTTCAATCACAAGTCTTGTATAGAGAT
AAAAATGAGCATAGAGATTGGGGGATGGTTTAATTGGTAAAGTACCTGCT
TTGCAAGCATGAGGACCTACCTGAGTTCAGACCCCAAGCATCTACCCGAA
AGCCAGGTGTGACAGTAAGCATAGGTAACCTAGTGCCATAGGTAGGGCAG
AGAGAGGTAAATCTCTGAAGCTGCTAACCAGCCAGTCCATCCCAAGTGGT
AAGCACCAGGTTGAGAGAGAAACTCTGTTTCTAAGAAAACTCTGTTTCTT
TTTTTTCCTTCTCCAATTTTTTATTAGGTATTTTCTTCATTTACATTTCA
AATGCTATCTCAAGTGTCCCTCATACCAACCACCAACCAACCCCACCCCT
GGCTCTCCTACCTACCCACTCCCACTTCTTGGCACTGGTGTTCCCCTGTA
CTGGGGCATATAAAGTTTGCAAGACCAAGGGCCTTTCTTCCCAATGATGG
GTGACTAGGCCTTCTTCTGATACTTATGCATCTATAGACAGGAGCTCTGG
TGGGTATGGTTAATTTTAATTTGTTGTTTCCCTTATAAGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_e05.g1 MSMg01no384_e05.g1 CHROMAT_FILE:
MSMg01no384_e05.g1 PHD_FILE: MSMg01no384_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:31 2005
         (544 letters)



>mm_chr6_81530826_81531768
          Length = 943

 Score =  617 bits (319), Expect = 0.0
 Identities = 341/349 (97%), Gaps = 3/349 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttgtctgaagaactcagcactggtagcttttttttttctgaaatgacagggagaatgg 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 346 agttgtctgaagaactcagcactggtagc-tttttttttctgaaatgacagggagaatgg 288

                                                                       
Query: 61  caaatgatcttgaaatggtattagaagctacacttcaatgtatcagtgttcaatcacaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 287 caaatgatcttgaaatggtattagaagctacacttcaatgtatcagtgttcaatcacgag 228

                                                                       
Query: 121 tcttgtatagagataaaaatgagcatagagattgggggatggtttaattggtaaagtacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 tcttgtatagagataaaaatgagcatagagattgggggatggtttaattggtaaagtacc 168

                                                                       
Query: 181 tgctttgcaagcatgaggacctacctgagttcagaccccaagcatctacccgaaagccag 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 tgctttgcaagcatgagaacctacctgagttcagaccccaagcatctacccgaaagccag 108

                                                                       
Query: 241 gtgtgacagtaagcataggtaacctagtgccataggtagggcagagagaggtaaatctct 300
           |||||||||||||||||||||| |||||||||||||||||||||||||  ||||||| ||
Sbjct: 107 gtgtgacagtaagcataggtaatctagtgccataggtagggcagagag--gtaaatccct 50

                                                            
Query: 301 gaagctgctaaccagccagtccatcccaagtggtaagcaccaggttgag 349
           ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 49  gaagctgctaaccagccagtccatcccaaatggtaagcaccaggttgag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 943
Length adjustment: 10
Effective length of query: 534
Effective length of database: 933
Effective search space:   498222
Effective search space used:   498222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |