Query= MSMg01no384_f09.b1 MSMg01no384_f09.b1 CHROMAT_FILE:
MSMg01no384_f09.b1 PHD_FILE: MSMg01no384_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:37 2005
(524 letters)
>mm_chr6_16058797_16059721
Length = 925
Score = 930 bits (481), Expect = 0.0
Identities = 512/523 (97%), Gaps = 3/523 (0%)
Strand = Plus / Minus
Query: 4 ggaattctttaataataagaccctgtaatgacctcagtcatatcacaatctgagaacagt 63
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ggaattctctaataataagaccctgtaatgacctcagtcatatcacaatctgagaacagt 666
Query: 64 taactcagtgagagttatgtaaggatatttaacctgtttgcatgctataattcaacatga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 taactcagtgagagttatgtaaggatatttaacctgtttgcatgctataattcaacatga 606
Query: 124 agggctcttgacagtgtaagtatcctaggaatattgggtcaggctgttctgctaagtggt 183
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 acggctcttgacagtgtaagtatcctaggaatattgggtcaggctgttctgctaagtggt 546
Query: 184 tctttgaagcaagcctctgttcaaagatttagtagtgaagaataaataacaataaaagca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tctttgaagcaagcctctgttcaaagatttagtagtgaagaataaataacaataaaagca 486
Query: 244 aacagaaagagaaactaacaatagtatagcatggctgatcaggaaattaacattttatca 303
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 485 aacagaaagagaaactaacaatactatagcatggctgatcaggaaattaacattttatca 426
Query: 304 --gactgaagaggaagaaacattcaaatagagatacatgattgtggaaatgactactggc 361
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 425 ttta-tgaagaggaagaaacattcaaatagagatacatgattatggaaatgactactggc 367
Query: 362 cttgtgagctagaaactggagttccagtaattctgcttcaagctggagcaagggatggga 421
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 366 cttgtgagctagaaactggagttccagtatttctgcttcaagctggagcaagggatggga 307
Query: 422 gggtattggccagggcacaagagtgatagtggccatgacagaaatctaaggtcataaagg 481
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gggtattggccagggcacgagagtgatagtggccatgacagaaatctaaggtcataaagg 247
Query: 482 aagctattattgaagagactcacattatgattacatgtaaatt 524
|||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 246 aagctattattgaagagactcaaattatgattacatgtaaatt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 925
Length adjustment: 10
Effective length of query: 514
Effective length of database: 915
Effective search space: 470310
Effective search space used: 470310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_f09.g1 MSMg01no384_f09.g1 CHROMAT_FILE:
MSMg01no384_f09.g1 PHD_FILE: MSMg01no384_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:37 2005
(575 letters)
>mm_chr6_15866556_15867530
Length = 975
Score = 992 bits (513), Expect = 0.0
Identities = 560/587 (95%), Gaps = 19/587 (3%)
Strand = Plus / Plus
Query: 1 actaattaatccattgtcagaaggcaatgctataacacatgaagactgttcatgctcaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaattaatccattgtcagaaggcaatgctataacacatgaagactgttcatgctcaca 260
Query: 61 gtggaagaggtgaaggttcatttcagctacagacaagcaaaaggaagtgaggccacagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggaagaggtgaaggttcatttcagctacagacaagcaaaaggaagtgaggccacagtg 320
Query: 121 gtatagatttgatatgctgtagcctgaggtcaggatcagtcactgggtgtcaaataattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtatagatttgatatgctgtagcctgaggtcaggatcagtcactgggtgtcaaataattt 380
Query: 181 aaggtcaatgtaatggctattcttggttgtgaattttactatatctgtaaagaactataa 240
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 381 aaggtcaatgtaatggctattcttggctgtcaattttactatatctgtaaagaactataa 440
Query: 241 tccagaattggagggctcacatgtgatccagatctagaagctggagaacacaagtttctt 300
| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 ttcagaattggagggctcacatgtgatccagatctaga-------gaacacaagtttctt 493
Query: 301 acctggatcttggcgtgaagatcttgaatcatagtgactatgaaaagcttaggcacaggc 360
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 494 acctggatcttggcgtgaagatcttgagtcatagtgactatgaaaagcttaggcacagga 553
Query: 361 aaggtagtacgtaactttaatcccaggagactaaggcaaggaaatctttgaattcaaggt 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aaggtagtacgtacctttaatcccaggagactaaggcaaggaaatctttgaattcaaggt 613
Query: 421 cagccaggattaaaacaagacccagattcaggtgaggtggtacacatctttaatctggtc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 cagccaggattaaaacaagacccagattcaggtgaggtggtacacatctttaatctggtc 673
Query: 481 cacgccttctactggagacctacatcaaaaaaaaaaaaaa------------gctctttt 528
|||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 674 cacgccttctactggagacctacatcaaaaaaaaaaaaaaaaaaaaaaaaaagctcttct 733
Query: 529 ttgatgcttgcatttacttgctagcacatctgttgaccagctgaaac 575
|||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ttgatgtttgcatttacttgctagcacatctgttgaccagctgaaac 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
