BAC Information

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BAC

Clone NameMSMg01-384K07
Chromosome6 (Build37)
Map Location 77,596,654 - 77,720,177
singlet/doubletdoublet
Overlap geneCtnna2
Upstream geneLOC100042956, Lrrtm1
Downstream geneLOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384K07.T7 (MSMg01no384_k07.b1)MSMg01-384K07.TJ (MSMg01no384_k07.g1)
ACCAG488031AG488032
length768746
length of high quality
(start - end)		483 (36 - 518)479 (66 - 544)
definitionCHROMAT_FILE: MSMg01no384_k07.b1 PHD_FILE: MSMg01no384_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:59 2005CHROMAT_FILE: MSMg01no384_k07.g1 PHD_FILE: MSMg01no384_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,596,654 - 77,597,132)(77,719,840 - 77,720,177)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCAA
GGTCTCTTCTGTGGTTTTATATTGATCACATGTTCCTATTCAGGTACATG
ATCTGAAATGGAGGTACAAGACTAAAAATCATCGAGAAACAGTACATCAC
CTAGGCTACATTAATCTGCATAGATAACCGGAGGCTGCACTGGGTTCTAG
TTTGGTTTTTATTGTGGCGATAAAACATTCTCCAAAAGCCAGTTGGGGAG
GAAAATATTAATTTCATCTTGTAAATTACATTTCATCCTCATGGGAAACT
AAAGGAGTAACTTGGGACAGAAACCTAAATCAGGGACCACAGAGTTACAT
TGCTAGGTTGCTTCCAGGCTCCCAGGCAGCTGGCTCTCTTACACAGTCCA
GGTTTACCTGCCTCAGGTTGACACTACAATTGGTGGGTTAGGCCTCCAGC
ATTAATTGCCAAACACATAAATGCCCAGGCACACATCCATAGCTCAATCT
GATGGAGGCAATTCTTCACTAGAGGTTGCACCTTTTCACGGTTGTCAAGT
TGACAATCAACATTAACCATCCTTCCACTTAGTATCAATGTTCGAAAAGA
TAGGATATCTTGAATTCCTTCGGGTCATAAGAAATTATAACCACCTTATT
AAACTGGAACGAAGGTTAACAATTTATAAGTTATAACCTTTTGGCTTGAG
AAAAAAAATATTTGTAAGTCAAAAGCTTAATTTTTTTACACGGGAAATTT
GACTTATTGCTCTACGGT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGTGCCATTATCCTTTCAAAATGGAAGAGTGAATG
TCAGAGTGAGTCCTTTTCCATTCACTAAGAAGTGGCAGGCTGCAGAAGCT
GGGAAGATGGCTGAGGACCTGAGTGAGATTCTTCACCCACATAGACTCAT
GTATGCTGGCTAGGTTTCAGAGTGCTCAAAGATGCTATGTAGGCTACAGG
TGGAGAAAAATTGTAATTTACCCAGTGATGGCCCACAGATGTACAACACT
GATCTGTCAGGAAAGATAAACGCACAGGTGGAACAGTAGCAAGACTGTTG
AGGAGCTAATCAACTCTTTTTCTGATTGGATTTGAAGTCTGTTCCAAAGA
AGAGAAATCATGCCTCGTACTATAAGCCTGGTCCAAAGCCATGGCTGGAC
AGGACATAGACCTTGGATGGGATGCCTACTACTGTTGCACTGTGAAACAG
GCATGCTATTANACTACCATTTAAATATGTATGTTTATACCTGTTGATTG
GCACTGCTCTGACTTGTCAGAAAAGCTGTTTCTATGAGCTGTGCAAAGAC
AGAAGGCTGAGATACATTGACTGGGGGGTACTAGGCTCTGAAGGAGCTTC
TATAGAAAGAAACCCTGCGAGGTTCAGGGACCCCCCCAGCAAAGAACCTG
GTTAAATTCGAAATTTGAAAAAGGACACGAATTGTTTTTTCTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_k07.b1 MSMg01no384_k07.b1 CHROMAT_FILE:
MSMg01no384_k07.b1 PHD_FILE: MSMg01no384_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:59 2005
         (483 letters)



>mm_chr6_77596450_77597332
          Length = 883

 Score =  880 bits (455), Expect = 0.0
 Identities = 473/479 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcaaggtctcttctgtggttttatattgatcacatgttcctattcaggtacat 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcaagttctcttctgtggttttatattgatcacatgttcctattcaggtacat 264

                                                                       
Query: 65  gatctgaaatggaggtacaagactaaaaatcatcgagaaacagtacatcacctaggctac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatctgaaatggaggtacaagactaaaaatcatcgagaaacagtacatcacctaggctac 324

                                                                       
Query: 125 attaatctgcatagataaccggaggctgcactgggttctagtttggtttttattgtggcg 184
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 325 attaatctgcatagataaccgaaggctgcactgggttctagtttggtttttattgaggcg 384

                                                                       
Query: 185 ataaaacattctccaaaagccagttggggaggaaaatattaatttcatcttgtaaattac 244
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 385 ataaaacattctccaaaagccagttggggaggaatttattaatttcatcttgtaaattac 444

                                                                       
Query: 245 atttcatcctcatgggaaactaaaggagtaacttgggacagaaacctaaatcagggacca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atttcatcctcatgggaaactaaaggagtaacttgggacagaaacctaaatcagggacca 504

                                                                       
Query: 305 cagagttacattgctaggttgcttccaggctcccaggcagctggctctcttacacagtcc 364
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 505 cagagttacattgctaggttgcttccaggctcccaggcagctggctttcttacacagtcc 564

                                                                       
Query: 365 aggtttacctgcctcaggttgacactacaattggtgggttaggcctccagcattaattgc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aggtttacctgcctcaggttgacactacaattggtgggttaggcctccagcattaattgc 624

                                                                      
Query: 425 caaacacataaatgcccaggcacacatccatagctcaatctgatggaggcaattcttca 483
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caaacacataaatgcccaggcacacatccatagctcaatctgatggaggcaattcttca 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no384_k07.g1 MSMg01no384_k07.g1 CHROMAT_FILE:
MSMg01no384_k07.g1 PHD_FILE: MSMg01no384_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:59 2005
         (479 letters)



>mm_chr6_77719840_77720718
          Length = 879

 Score =  638 bits (330), Expect = 0.0
 Identities = 336/338 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgccattatcctttcaaaatggaagagtgaatgtcagagtgagtccttttccattcac 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 338 agtgccattatcctttcaaaatggaagagtgaatgtcagagtgagtactttcccattcac 279

                                                                       
Query: 61  taagaagtggcaggctgcagaagctgggaagatggctgaggacctgagtgagattcttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 taagaagtggcaggctgcagaagctgggaagatggctgaggacctgagtgagattcttca 219

                                                                       
Query: 121 cccacatagactcatgtatgctggctaggtttcagagtgctcaaagatgctatgtaggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 cccacatagactcatgtatgctggctaggtttcagagtgctcaaagatgctatgtaggct 159

                                                                       
Query: 181 acaggtggagaaaaattgtaatttacccagtgatggcccacagatgtacaacactgatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 acaggtggagaaaaattgtaatttacccagtgatggcccacagatgtacaacactgatct 99

                                                                       
Query: 241 gtcaggaaagataaacgcacaggtggaacagtagcaagactgttgaggagctaatcaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  gtcaggaaagataaacgcacaggtggaacagtagcaagactgttgaggagctaatcaact 39

                                                 
Query: 301 ctttttctgattggatttgaagtctgttccaaagaaga 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 38  ctttttctgattggatttgaagtctgttccaaagaaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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