Query= MSMg01no384_k18.b1 MSMg01no384_k18.b1 CHROMAT_FILE:
MSMg01no384_k18.b1 PHD_FILE: MSMg01no384_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:01 2005
(571 letters)
>mm_chr6_61992472_61993442
Length = 971
Score = 899 bits (465), Expect = 0.0
Identities = 546/597 (91%), Gaps = 37/597 (6%)
Strand = Plus / Plus
Query: 12 gaattctcttttgtccacctacagcaaatacatttattagagcctaatatgatgtaaata 71
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 175 gaattctcttttgtccacctacagcaaataaatttattagagcctgatatgatgtaaata 234
Query: 72 aaatgaatgatttatgtcagcttcatgcataggtaagaacaagcatttactagaatccaa 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 aaatgaatgatttatgtcagcttcatgcataggtaagaacaagcatttactagaatccaa 294
Query: 132 acagcaagaaaaagaacaatctgcagaaaattatctttaacgtcacatgcatgttataca 191
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 295 acagcaagaaaaagaacaatctgcagaatattatctttaacgtcacatgcatgttatata 354
Query: 192 tgtgcatacttacatatgaaat-------------------------------------c 214
| |||||||||||||||||||| |
Sbjct: 355 tatgcatacttacatatgaaatatattaatttatctgtttagtaagtataaagctgtatc 414
Query: 215 aggaattgaccagtagttaccatgaatttaataaaatgtgaaactcgtaaaaatatctgg 274
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 415 aggaattgaccagtagttaccatgagtttaataaaatgtgaaactagtaaaaatatctgg 474
Query: 275 ttggttaagttgaacaaaaaattattatgagaagaacaattttcgactagtctttatgga 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 475 ctggttaagttgaacaaaaaattattatgagaagaacaattttcgactagtctttacgga 534
Query: 335 tagtttaccttacatctgacatactaacactgagcacaaatactggtgattctatacatg 394
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 taatttaccttacatctgacatactaacactgagcacaaatactggtgattctatacatg 594
Query: 395 catcctcatgcattttggtgcccatgtaatgattacctcttttggacctgccacaatttg 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 catcctcatgcattttggtgcccatgtaatgattacctcttttggacctgccacaatttg 654
Query: 455 taagaattaaacatttatctccccaggaaagtggtacccagagtaatagtgtgtgagctg 514
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 655 taagaattaaacatttatctccccaggaaagtgatacccagagtaatagtgtgtaagctg 714
Query: 515 gtgagctccagactgcattttgatcatagtagattaacaacgaagcctttcatttca 571
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 715 gtgggctccagactgcattttgatcatagcagattaacaacgaagcctttcatttca 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_k18.g1 MSMg01no384_k18.g1 CHROMAT_FILE:
MSMg01no384_k18.g1 PHD_FILE: MSMg01no384_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:01 2005
(558 letters)
>mm_chr6_62141263_62142228
Length = 966
Score = 988 bits (511), Expect = 0.0
Identities = 547/563 (97%), Gaps = 8/563 (1%)
Strand = Plus / Minus
Query: 1 tctggagtgagcatgttgttctaaactgagtataaaaaggccagagcttcggttccctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 tctggagtgagcatgttgttctaaactgagtataaaaaggccagagcttcggttccctaa 704
Query: 61 aaatctgatctcaacagaggaaaccatgtcatttcttgtgttcttgtcttcctgtaactt 120
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 703 aaatctgatcccaacagaggaaaccatgtcatttcttgtgttcttgttttcctgtaactt 644
Query: 121 actttcatggtccattgttcctttccagtataaagaacacagcagcaagaattacatgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 actttcatggtccattgttcctttccagtataaagaacacagcagcaagaattacatgcc 584
Query: 181 tcagaccttagttgagaatgaattagtgtcttgaaaaactgaatgagagttaagtaaatg 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tcagaccttagctgagaatgaattagtgtcttgaaaaactgaatgagagttaagtaaatg 524
Query: 241 aaagcaaggataccaaaaagaattttagattagtatttaaataaagtgcaactagaagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 aaagcaaggataccaaaaagaattttagattagtatttaaataaagtgcaactagaagaa 464
Query: 301 atgctcatctgagacatgtacagctatggcacactgtaaataataatgtaacctgcaagt 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 463 atgctcatctgagacatgtacagctatggtacactgtaaataataatgtaacctgcaagt 404
Query: 361 aataagcataaaaactcacaacaaaggcaaacttataattagtagca-----tgcagagg 415
|||||||||||||||||||| |||||||||| |||| |||||||||| ||||||||
Sbjct: 403 aataagcataaaaactcacagcaaaggcaaatttatgattagtagcacagcatgcagagg 344
Query: 416 cttaaacaaagaacttaaagagtcttgggagttttagtggcaggtctcttctctaacagg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cttaaacaaagaacttaaagagtcttgggagttttagtggcaggtctcttctctaacagg 284
Query: 476 tgcaaagacatggcattaggttagattcctagcatcaaaaaaaaaaaaaaaaaa---gaa 532
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 283 tgcaaagacatggcattaggttagattcctagcatcaaaaaaaaaaaaaaaaaaaaagaa 224
Query: 533 attctcaaggaatggtaaaagac 555
|||| ||||||||||||||||||
Sbjct: 223 attcacaaggaatggtaaaagac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 966
Length adjustment: 10
Effective length of query: 548
Effective length of database: 956
Effective search space: 523888
Effective search space used: 523888
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
