Query= MSMg01no384_k22.b1 MSMg01no384_k22.b1 CHROMAT_FILE:
MSMg01no384_k22.b1 PHD_FILE: MSMg01no384_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:02 2005
(476 letters)
>mm_chr6_40170600_40171476
Length = 877
Score = 698 bits (361), Expect = 0.0
Identities = 388/397 (97%), Gaps = 3/397 (0%)
Strand = Plus / Minus
Query: 4 ggaattctctcttgcc-cacaactgagtcagccttctcctctgccttttc-acatttggg 61
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 396 ggaattctctcttgccacacaactgagtcagccttctcctctgccttttcaacatttgtg 337
Query: 62 ggtcatcttggggtataaggaaaggactcacatagttttgtgcttattcagtcatcctga 121
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 336 ggtcatcttggggtataaggaaaggactcacatagttttgtacttattcagtcatcctga 277
Query: 122 cagcatacttggcctgtgttatggagaaagggagctataagcaggagagagaacacagct 181
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 276 cagcatacttggcctgtgttat-gagaaagggagctataagaaggagagagaacacagct 218
Query: 182 gttttcagaaaatttcctcaaccttccaaaggctgcagttcctcatgttgtgacccacaa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 217 gttttcagaaaatttcctcaaccttccaaaggctgcagttcctcatgttgtgacccaaaa 158
Query: 242 ccataacattatttttgtggctacttcatagttgtaattttgctgctgttatgaactgta 301
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 ccataacattatttttatggctacttcatagttgtaattttgctgctgttatgaactgta 98
Query: 302 atgtaaatacctgtgttttctgatgatcttaagtggcccctgtgaaaggtttgttcttcc 361
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 97 atgtaaatacctgtgttttctgatgatcttaagtagcccctgtgaaaggtttgttcttcc 38
Query: 362 tcccacaggagccgaaacccacgggttgagaaccact 398
|||||||||||||||||||||||||||||||||||||
Sbjct: 37 tcccacaggagccgaaacccacgggttgagaaccact 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 877
Length adjustment: 10
Effective length of query: 466
Effective length of database: 867
Effective search space: 404022
Effective search space used: 404022
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_k22.g1 MSMg01no384_k22.g1 CHROMAT_FILE:
MSMg01no384_k22.g1 PHD_FILE: MSMg01no384_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:02 2005
(472 letters)
>mm_chr6_39996502_39997373
Length = 872
Score = 843 bits (436), Expect = 0.0
Identities = 457/464 (98%)
Strand = Plus / Plus
Query: 1 tcaaatctagtatattcttgattttacaacgaaacccatatttaatgatcccattgcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaaatctagtatattcttgattttacaacgaaacccatatttaatgatcccattgcttg 260
Query: 61 tagtgataagtggatggaacaaatctatttttaaaaataactattttgcttatgacatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtgataagtggatggaacaaatctatttttaaaaataactattttgcttatgacatgg 320
Query: 121 agttgtattttatttgtcagggttagagaccaagcctagggctgtgcccacgctaggcat 180
|||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 321 agttgtgttttatttgtcagggctagagaccaagcctagggctgtgcccacactaggcat 380
Query: 181 atgttctaccgctcaagcacagctccagcgcaaatggcacacatttcaaacatttaatct 240
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 381 atgttctaccgctcaagcacagctccagcgcaaatggcacacgtttcaaacgtttaatct 440
Query: 241 ttatgccttgtttcaaagggggaggtgttttaattacttctcccgttgctttcacaaaat 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 ttatgccttgtttcaaagggggaggtgttttaattacttcacccgttgctttcacaaaat 500
Query: 301 ccctgaggaaggaaggagttgcttgggctcacagttgaagaagatgggaagcctctcggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccctgaggaaggaaggagttgcttgggctcacagttgaagaagatgggaagcctctcggc 560
Query: 361 agggaaagcaaggcgcagcagtgatgcagtggagtgcccagcatcagcagcacagtcaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agggaaagcaaggcgcagcagtgatgcagtggagtgcccagcatcagcagcacagtcaag 620
Query: 421 aagcagagagaaggtcccagtgctcagctcactttcttctttct 464
||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 aagcagagagaaggtcccagtgctcagctcactttctcctttct 664
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
