Query= MSMg01no384_n19.b1 MSMg01no384_n19.b1 CHROMAT_FILE:
MSMg01no384_n19.b1 PHD_FILE: MSMg01no384_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:15 2005
(519 letters)
>mm_chr6_4289948_4290866
Length = 919
Score = 975 bits (504), Expect = 0.0
Identities = 507/508 (99%)
Strand = Plus / Plus
Query: 12 gaattcattgttttcttaatgagaaggcaaatactgtattcttcattcctaatccaaaaa 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gaattcattgttttcttaatgagaaggcaaatactgtattcttcattcctaatccaaaaa 271
Query: 72 catttttctgaatacaccttgcttaggtgttatttggctgatcctacaataacaagtggg 131
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tatttttctgaatacaccttgcttaggtgttatttggctgatcctacaataacaagtggg 331
Query: 132 atggagcaatcagtcacttcttgcttctggttgaatataaagggggcttaaagaagcatt 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 atggagcaatcagtcacttcttgcttctggttgaatataaagggggcttaaagaagcatt 391
Query: 192 gcctatgggaacaacatagcatccagaattttcatcactagtatttatgagaggaacttt 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gcctatgggaacaacatagcatccagaattttcatcactagtatttatgagaggaacttt 451
Query: 252 tatcacgtaaatatatgtttcaattacttttttctactttctgtttacattatgatccaa 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tatcacgtaaatatatgtttcaattacttttttctactttctgtttacattatgatccaa 511
Query: 312 atattttattataattatcagacaagtagaagatttaagttacactactaataaaacggg 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 atattttattataattatcagacaagtagaagatttaagttacactactaataaaacggg 571
Query: 372 tggaaagacctatgggatctttctctcagtacagaagctaataaaaacgatatattttgc 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tggaaagacctatgggatctttctctcagtacagaagctaataaaaacgatatattttgc 631
Query: 432 agtctgtccagctaagtttgagtcagaacctcatctctaactggggtgacccgggacatc 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 agtctgtccagctaagtttgagtcagaacctcatctctaactggggtgacccgggacatc 691
Query: 492 acattcctcatcttcacaatgagaatta 519
||||||||||||||||||||||||||||
Sbjct: 692 acattcctcatcttcacaatgagaatta 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_n19.g1 MSMg01no384_n19.g1 CHROMAT_FILE:
MSMg01no384_n19.g1 PHD_FILE: MSMg01no384_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:15 2005
(524 letters)
>mm_chr6_4463167_4464090
Length = 924
Score = 1000 bits (517), Expect = 0.0
Identities = 522/524 (99%)
Strand = Plus / Minus
Query: 1 tctttttgatactccccagaaagtaatttcaaagacaggggaatctgaaatccatatcaa 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 724 tctttttgatactccccagaaagtagtttcaaagacaggggaatctgaaatccatatcaa 665
Query: 61 tttctcagatgtatgtccaccattctaatttttaacataagaggacatctactcctgctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tttctcagatgtatgtccaccattctaatttttaacataagaggacatctactcctgctt 605
Query: 121 tatttcccactttggctcttcttgagaaatggattctactttacatgtgagtaatgtctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tatttcccactttggctcttcttgagaaatggattctactttacatgtgagtaatgtctg 545
Query: 181 gcattagcagaaacaactcatttcaaatgtctaagacaaacaatgtcgaaagaatgcttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gcattagcagaaacaactcatttcaaatgtctaagacaaacaatgtcgaaagaatgcttc 485
Query: 241 aatttttcacttcaaatatgaatgttttaaattacaaggaaaaatcaggaaattggaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aatttttcacttcaaatatgaatgttttaaattacaaggaaaaatcaggaaattggaaat 425
Query: 301 catcaattaaagctacattattttacaagtgagagttttaatttacagaaaatattgtct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 catcaattaaagctacattattttacaagtgagagttttaatttacagaaaatattgtct 365
Query: 361 tgcctttgtagtatattagtttacttcggcccattagtttcagaataatgtcttgtgcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tgcctttgtagtatattagtttacttcggcccattagtttcagaataatgtcttgtgcag 305
Query: 421 atagagcactgatgtagagcccaggtaaaagttgtgtttaaagaccatgataactaacag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 atagagcactgatgtagagcccaggtaaaagttgtgtttaaagaccatgataactaacag 245
Query: 481 ataaatgcctttagaanacagataattagaatcaccaaattgtg 524
|||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 244 ataaatgcctttagaaaacagataattagaatcaccaaattgtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space: 469796
Effective search space used: 469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
