BAC Information

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BAC

Clone NameMSMg01-384O13
Chromosome6 (Build37)
Map Location 110,001,863 - 110,002,189
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639110, LOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384O13.T7 (MSMg01no384_o13.b1)MSMg01-384O13.TJ (MSMg01no384_o13.g1)
ACCAG488234AG488235
length972717
length of high quality
(start - end)
---326 (316 - 641)
definitionCHROMAT_FILE: MSMg01no384_o13.b1 PHD_FILE: MSMg01no384_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:19 2005CHROMAT_FILE: MSMg01no384_o13.g1 PHD_FILE: MSMg01no384_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTGCTTACATATTCCCACAAAGGACATGGAGGATGGGGGACTGTTTCCC
CTCTGTCCCTCCCCGGGCGGCTGCGACCCTTTCGTTCACCTTGTTTTCCT
TGCCACCTACCGACTCATCTCCTCGTCTACCCTGCGGCCGGCTTGGCTCT
TTCGTGGTGGTCGTTTTCCCTCTTTTATTACTCTCCACTGTTCTAGGCAC
CTCTCTTCCCTTCGTTTCAGTCAATGCTTTCTTTTTCTTCCCCCCCCCCC
CTACATTCGTGATCGGTGCGGTCTTTCGCCAGCTAAGAATAGAAGAGTGC
GTAGCAAATGAGATAGTCGTATTGGGCGGTGTAGGGGGCGTAGCAGAAAA
ATCACCAATACCATACTAAAACTTTTCTCCGAACAATTACCGATGCCATA
AGTCACTAGCGCAAAGACAACGGAAAGTAGCCATACATAGCCCTGTACCT
GAGTAGTAAGCCCGGAGAAAGCCCGATAGTAGTGAGACGGGTAGGAAAAT
AATGGCTGGGCGCATCGGGGAGTGATCAACCACACAATGAATCCAGTACA
CATAAGAATCCACCAAATAGAGACTAAAGTAACATAAACTAGTGAACCCG
TAAGATGGACCGCCGTCCTCCGATTTAAAGGACCACAGAAATACGCCGCG
CCGACCTCGCGAACCATCCCGAACATCCCCCACCACAGGCCAAAAAAGTA
TCCCCGAGAAACCATACGTGACGACCCATAGGGCAATCTCCGTAGTCGTC
GCGACCCCCACAACCGTCCGATCACCGTCACACAACGTACCGTCGTTATC
CCTTACATCCTCACCACGTTACCTCATATTATTACATCCTACTTACCCAT
CTCCATCCTTCAGCCCTCCTGATCATTTCATCTTCATTTCGCTTCCGCTT
CGCCTACCCATTCCTCCCTCACCTTACTCACCTTTCTTCAGTCCTTCTCC
ATAACCCTTCACCTTCTTGCCT
GTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTTACAAGCAGAATTCTTACCTGAGGAATACCGAATGGCAGAGAAGCACC
TGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACA
ACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTTTGG
CGGTTCTNCATAAATTTGGACATAGTACTACTGGAGGATCCAGCAATACC
TCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACAT
GCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAAGTCAACTTAT
ATTCTAAGACACTCATTTTAAGGACCTTAAAGTTGCCTAGCCCACTCACT
AAGATTTCTCAGGGTAGGTACTCTGTTGCAACTTAATTATCACTGAATAT
CTTCAGTACAAAGCCATTTGGGTTTTTTTCAGTAAATTTGTGAACATTCA
TCTGCACAGTTGTTTTCCTTTACATCTTGGTCATTGAGTGTATTATGTTT
GAATGTTTGTACATGGAACAGAGAGTAGGATTTGTCACTATGTGGTTTAG
ATGTACATTATTGTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_o13.g1 MSMg01no384_o13.g1 CHROMAT_FILE:
MSMg01no384_o13.g1 PHD_FILE: MSMg01no384_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:19 2005
         (326 letters)



>mm_chr6_110001663_110002389
          Length = 727

 Score =  625 bits (323), Expect = 0.0
 Identities = 326/327 (99%), Gaps = 1/327 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggacatagtactactggaggatccagcaatacctctcctgggcatatatccagaagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggacatagtactactggaggatccagcaatacctctcctgggcatatatccagaagat 260

                                                                       
Query: 61  gccccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataata 320

                                                                       
Query: 121 gccaagtcaacttatattctaagacactcattttaaggaccttaaagttgcctagcccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccaagtcaacttatattctaagacactcattttaaggaccttaaagttgcctagcccac 380

                                                                       
Query: 181 tcactaagatttctcagggtaggtactctgttgcaacttaattatcactgaatatcttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcactaagatttctcagggtaggtactctgttgcaacttaattatcactgaatatcttca 440

                                                                       
Query: 241 gtacaaagccatttgggttttttt-cagtaaatttgtgaacattcatctgcacagttgtt 299
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 gtacaaagccatttgggttttttttcagtaaatttgtgaacattcatctgcacagttgtt 500

                                      
Query: 300 ttcctttacatcttggtcattgagtgt 326
           |||||||||||||||||||||||||||
Sbjct: 501 ttcctttacatcttggtcattgagtgt 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 727
Length adjustment: 9
Effective length of query: 317
Effective length of database: 718
Effective search space:   227606
Effective search space used:   227606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)