BAC Information

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BAC

Clone NameMSMg01-385I15
Chromosome6 (Build37)
Map Location 140,966,492 - 140,966,812
singlet/doubletsinglet
Overlap genenone
Upstream genePlcz1, Capza3, LOC100042680, LOC100039020, LOC269810, Plekha5, Aebp2, EG664868
Downstream geneLOC664875, Pde3a, Slco1c1, Slco1b2, EG435927, Slco1a4, LOC100042750, EG664913, Slco1a1, EG625716
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385I15.T7 (MSMg01no385_i15.b1)MSMg01-385I15.TJ (MSMg01no385_i15.g1)
ACCAG488716AG488717
length741764
length of high quality
(start - end)
---321 (62 - 382)
definitionCHROMAT_FILE: MSMg01no385_i15.b1 PHD_FILE: MSMg01no385_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:08 2005CHROMAT_FILE: MSMg01no385_i15.g1 PHD_FILE: MSMg01no385_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTACACTCCTTTTCCCAAGATCCNCGNATTCNCAATTTCCNTTAGTGTT
CAAGAAACTGGAAAAAATAAAAATTCCATAATGNATATCTTAATTTANNN
TTTCTTTGCTGTAGAANNAACCTTAATCAATTTAATTTAAAATCCTGGGG
GTTTTATTTAGTTTTTTTTTAATTTTTGATTTACTTTTNTTTTTTTTTNN
NNNAACTTTNNTTTTTCCCNCCAAATANGTTTTNAAACTATTAAAATTTT
TTTTTCAAACCANNAAAATTTTTTTTCCNNCCTCANNCTTTTTTTCCNNT
ACTTTCCTTTCNNNNCCCCCTTTTTCCTTNCCCCTCTCCTCTATCCTTTC
NCCTNNCCCCCTTTTCCCCCCCCCNNCCNAATTTTCCCCCTTTTCNCTTT
TCCCTTTCCCNCNCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNACAAC
CCCTTTTTCCCCCTCTCCCCTTTTTTCCCCCCCCCCTCCCCCCCCCCCCC
CCCNCCCCCCCTCNNCCNCTTTTCTCCCCCCCTTTTTNTTTTCCCCNCCC
CCTTCTTCTTCCCCCCCCTTCTTCCTTCTCCTCCCCTCNTCCTCCCTTTT
CCCCCTTTCCCTTTTTCCCCCTTCCCCCCCTTTTCCCCCCCCCTCCCCCC
CCCTTCCCCCCCCCCCTNCCCCCTTCTTTTCTTCCCCCCCTTTCCCCCCT
CTCCCCCCCTCCCCCTTTTTTTTTTTTTTTTTTTTTTATTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCAGTTTACGATCACCTCCTGAGTAAAACCCTCCCTCTC
CAAAGCCAAAAAAGGAAACTAAAGGAAATGAATAAATAGTATATAACTAT
TGTCAATGGAATAAAGTTGACTTTGTGGGTGTAGGGAACACTGCAGCATG
GCATTTGCAATGGTTAAAGAAAAGACAGGAGTACTGATCTCTTTAGACTT
CAAAGTTCTGCAAAGCAACGAGATCGCCTGAAACTACACTTGTCAGTAGG
AACCAAGTTAAGAACTCCCACCTGTCAAATGGTTTATCTGAAAAAAAACA
TGGTACTCTAATGAAAAGTGTTGATTGGACTCATGCTGAAGCTATGGCTA
TTGTCATTTCAAATGATTTATTATTGTTTAACAATAACTTCCCTGATTGA
ACAAATAGCTACTCCACATTGGCTAATGATAAGTTCCCTGATAGCTACTC
CACAGCCCATCCTTTTGTTTCTTGTTCCCATTTTTTATTTCACCTCGCTT
AACTTCTCTATTTCATTTTTTTCTTTTCTCTTCCTTTTCTCTCTTCTTTT
CCCCGCCTTTCACTCTCCTCCACTCTTCTCCTTTCTCTCCCTTTTCCCCC
CCTCCCCCTCCCCTATTTTTCCCCTCTTCTACCGCATCTACCCCTCTTTA
CTTCTTTTTTTATTTCCCCCCCCCTTTCCCTTTTTTCCTCCCCTCCACCT
ATCTTCTCCCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_i15.g1 MSMg01no385_i15.g1 CHROMAT_FILE:
MSMg01no385_i15.g1 PHD_FILE: MSMg01no385_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:08 2005
         (321 letters)



>mm_chr6_140966292_140967012
          Length = 721

 Score =  613 bits (317), Expect = e-180
 Identities = 320/321 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagtttacgatcacctcctgagtaaaaccctccctctccaaagccaaaaaaggaaacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tcagtttacgatcacctcctgagtaaaaccctccctctccaaagccaaaaaaggaaacta 462

                                                                       
Query: 61  aaggaaatgaataaatagtatataactattgtcaatggaataaagttgactttgtgggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aaggaaatgaataaatagtatataactattgtcaatggaataaagttgactttgtgggtg 402

                                                                       
Query: 121 tagggaacactgcagcatggcatttgcaatggttaaagaaaagacaggagtactgatctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tagggaacactgcagcatggcatttgcaatggttaaagaaaagacaggagtactgatctc 342

                                                                       
Query: 181 tttagacttcaaagttctgcaaagcaacgagatcgcctgaaactacacttgtcagtagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tttagacttcaaagttctgcaaagcaacgagatcgcctgaaactacacttgtcagtagga 282

                                                                       
Query: 241 accaagttaagaactcccacctgtcaaatggtttatctgaaaaaaaacatggtactctaa 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 accaagctaagaactcccacctgtcaaatggtttatctgaaaaaaaacatggtactctaa 222

                                
Query: 301 tgaaaagtgttgattggactc 321
           |||||||||||||||||||||
Sbjct: 221 tgaaaagtgttgattggactc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)