Query= MSMg01no385_i19.b1 MSMg01no385_i19.b1 CHROMAT_FILE:
MSMg01no385_i19.b1 PHD_FILE: MSMg01no385_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:09 2005
(569 letters)
>mm_chr6_32073762_32074730
Length = 969
Score = 795 bits (411), Expect = 0.0
Identities = 462/485 (95%), Gaps = 11/485 (2%)
Strand = Plus / Minus
Query: 96 atatttggaaaaaaatgcccacacgaacatgtctactatttatttttcttattatcattg 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969 atatttggaaaaaaatgcccacacgaacatgtctactatttatttttcttattatcattg 910
Query: 156 ctccataaacaatacagcttggcagctatatacacagctttgctgtgcactagaaacctt 215
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 909 ctccataaacaatacagcttggcagctatatacacagctttgctgtacactagaaacctt 850
Query: 216 ttaataacttacatactatgtaagtatatgaaagataaatgtcagatgtgcatacatcct 275
|||||||| ||||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 849 ttaataacctacataccatgtaagtatatgaaagataaatgtcagatgtgcacacgtcct 790
Query: 276 gtgccaattttagaaaggacttgcctaggcagcttttgataggagatgttcttggagcta 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gtgccaattttagaaaggacttgcctaggcagcttttgataggagatgttcttggagcta 730
Query: 336 atcagcttttggggaaccaaggcatgtctaaaatattgtttcatacagacctatagatca 395
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 729 atcagcttttggggaaccaaggcatgtctaaaatattgtttcacacagacctatggatca 670
Query: 396 atatatagaatatgtccaattcttctcccccagtgagtcctcaaacccttctgagtaaat 455
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 atatataaaatatgtccaattcttctcccccagtgagtcctcaaacccttctgagtaaat 610
Query: 456 cttacaccatacacataacctccaggcaactactcttctgatttttaccatcactaaatg 515
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 609 cttactccatacacataacctccaggcgactactcttctgatttttaccatcactaaatg 550
Query: 516 gttttgcacat-ac----------ttcacttaaagggggatgaacactagtccattactt 564
||||||||||| || |||||||||||| ||||||||||||||||||||||
Sbjct: 549 gttttgcacatcactaaatggtttttcacttaaaggcagatgaacactagtccattactt 490
Query: 565 ttacc 569
|||||
Sbjct: 489 ttacc 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no385_i19.g1 MSMg01no385_i19.g1 CHROMAT_FILE:
MSMg01no385_i19.g1 PHD_FILE: MSMg01no385_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:09 2005
(183 letters)
>mm_chr6_31887800_31888382
Length = 583
Score = 344 bits (178), Expect = 2e-99
Identities = 181/182 (99%)
Strand = Plus / Plus
Query: 1 aaactagaaaatacctggggagcacaaagcgggtaaatggggaatgggcaggaccttgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaactagaaaatacctggggagcacaaagcgggtaaatggggaatgggcaggaccttgaa 260
Query: 61 ctttgctcgaaggtccacatagaagaactcaggcagcttttctcctcccagattccactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttgctcgaaggtccacatagaagaactcaggcagcttttctcctcccagattccactt 320
Query: 121 tgggtctcacctttattggtcttttctttagttatgtgttgttgttgttgttgttgttgt 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggtctcacttttattggtcttttctttagttatgtgttgttgttgttgttgttgttgt 380
Query: 181 tg 182
||
Sbjct: 381 tg 382
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space: 100625
Effective search space used: 100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
