Query= MSMg01no385_j17.b1 MSMg01no385_j17.b1 CHROMAT_FILE:
MSMg01no385_j17.b1 PHD_FILE: MSMg01no385_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:13 2005
(518 letters)
>mm_chr6_61953599_61954517
Length = 919
Score = 913 bits (472), Expect = 0.0
Identities = 505/518 (97%), Gaps = 5/518 (0%)
Strand = Plus / Minus
Query: 4 ggaattcttgcttccc---cattaacctgacacaaaaaataaggtgattgctaacgtgaa 60
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ggaattcttgct--acaaacattaacctgacacaaaaaataaggtgattgctaacgtgaa 662
Query: 61 ttgatgaatttttaaatacacaatagatatggagtcatcaaaaagttaatgataaaaaat 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 661 ttgatgaatttttaaatacacaatagatatggagtcaccaaaaagttaatgataaaaaat 602
Query: 121 tttaaatgagttacctaatttaatggaggtcacaggactaagaaatctactacaatacat 180
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 601 tttaaatgagttacctaatttaatggaggtttcaggactaagaaatctactacaatacat 542
Query: 181 cattcttaactgagtcttgtatataagaaataacaaacgtatctataaatgacattttga 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 541 cattcttaactgagtcttgtatataaaaaataacaaacgtatctataaatgacattttga 482
Query: 241 agagagcaaagaattgtgaaaacatgggtggcaaatttaattttacttccttatatctac 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agagagcaaagaattatgaaaacatgggtggcaaatttaattttacttccttatatctac 422
Query: 301 catagtgtttcagaaccaaatttataagtggctcttgaactttgtgttgactaaaagata 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 421 catagtgtttcagaaccaaatttataagtggctcctgaactttgtgttgactaaaagata 362
Query: 361 ttgtacatagacagatatgttataattacttagaatattttccaatgtaaagaagaaaca 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 361 ttgtacatagacagatatgttataattacctagaatattttccaatgtaaagaagaaaca 302
Query: 421 catatatgaccaacagagcttagaagaacagataaagaaattaaatactcagaatgtata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 catatatgaccaacagagcttagaagaacagataaagaaattaaatactcagaatgtata 242
Query: 481 ataattatttgagtttgaaacaattcctttattatcca 518
||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ataattatttgagtttgaaacaattcctttattatcca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 919
Length adjustment: 10
Effective length of query: 508
Effective length of database: 909
Effective search space: 461772
Effective search space used: 461772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no385_j17.g1 MSMg01no385_j17.g1 CHROMAT_FILE:
MSMg01no385_j17.g1 PHD_FILE: MSMg01no385_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:13 2005
(481 letters)
>mm_chr6_61718606_61719487
Length = 882
Score = 911 bits (471), Expect = 0.0
Identities = 479/482 (99%), Gaps = 1/482 (0%)
Strand = Plus / Plus
Query: 1 tttttctcaaaacaaaacatttaaaaatcatgagcattgtgctttgagtggttgtttact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttttctcaaaacaaaacatttaaaaatcatgagcattgtgctttgagtggttgtttact 260
Query: 61 cctattgtgatagatggctctgcgtgcctctatttttttttttt-catactggaaacatc 119
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 cctattgtgatagatggctctgcgtgcctctatttttttttttttcatactggaaacatc 320
Query: 120 atcaaatcttcaaggcgacacagctggagaaagaccaaaggattttagtttctcacttgc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcaaatcttcaaggcgacacagctggagaaagaccaaaggattttagtttctcacttgc 380
Query: 180 tttccacaaagacagcccccctcccacctgtgcaattaagagaccaaaaaagcgatcttt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttccacaaagacagcccccctcccacctgtgcaattaagagaccaaaaaagcgatcttt 440
Query: 240 tctacaaactccatttgaaattcaaaagcctgtagcctagaagttgaaagtaataccact 299
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 tctacaaactccatttgaaattcaaaagcctgtagccgagaagttgaaagtaataccact 500
Query: 300 aagataatcattcataataatagaagtcaattttaagactattgtaactccaagggtggt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagataatcattcataataatagaagtcaattttaagactattgtaactccaagggtggt 560
Query: 360 ctaacctgcagcaattagttctaaatgttattgttgaggcagtttatgaggtaaattaac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctaacctgcagcaattagttctaaatgttattgttgaggcagtttatgaggtaaattaac 620
Query: 420 tatcacttanatcagaaaatgaagtttcctaaattatggctggaaataaaagacagcaaa 479
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatcacttaaatcagaaaatgaagtttcctaaattatggctggaaataaaagacagcaaa 680
Query: 480 aa 481
||
Sbjct: 681 aa 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 882
Length adjustment: 10
Effective length of query: 471
Effective length of database: 872
Effective search space: 410712
Effective search space used: 410712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
