Query= MSMg01no385_m01.b1 MSMg01no385_m01.b1 CHROMAT_FILE:
MSMg01no385_m01.b1 PHD_FILE: MSMg01no385_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:24 2005
(422 letters)
>mm_chr6_7894139_7894960
Length = 822
Score = 752 bits (389), Expect = 0.0
Identities = 416/435 (95%), Gaps = 17/435 (3%)
Strand = Plus / Minus
Query: 5 gaattctagcatgtcacaaaatggtttcttcactaagaaagttaatttggactagcaaaa 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 gaattctagcatgtcaaaaaatggtttcttcactaagaaagttaatttggactagcaaaa 723
Query: 65 tggctcaggaagttagcacacctgccaccaagtgggacattgtaacttcagtccccaaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tggctcaggaagttagcacacctgccaccaagtgggacattgtaacttcagtccccaaaa 663
Query: 125 cccacagtgtggaaagaagtaaagaatcactttttcaagttgtcctctgaattccatgag 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 662 cccacagtgtggaaagaagtaaagaatcactttttcaagttgtcctctgaattccatgtg 603
Query: 185 tgtattgtttgtggcatttgtgcgccacatgtgtagacacacatacacaaatacaaacat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tgtattgtttgtggcatttgtgcgccacatgtgtagacacacatacacaaatacaaacat 543
Query: 245 gattgtatggttccatgttcaaaacaatcccatctaagggatagagtcacaagctatcta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gattgtatggttccatgttcaaaacaatcccatctaagggatagagtcacaagctatcta 483
Query: 305 tcacatgtgaacaatcatatcaacctcaaatcacaggccactgggacat--------gag 356
||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 482 tcacatgtgaacaatcatatcaacctcaaatcacaggccactgggacatgagagagagag 423
Query: 357 agagagagagagagagagagagagagagagagagagaggcatgcacgggg---------g 407
|||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 422 agagagagagagagagagagagagagagagagagagaggcatgcacggggtgggggggag 363
Query: 408 gggaggaaagggagg 422
|||||||||||||||
Sbjct: 362 gggaggaaagggagg 348
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space: 335769
Effective search space used: 335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no385_m01.g1 MSMg01no385_m01.g1 CHROMAT_FILE:
MSMg01no385_m01.g1 PHD_FILE: MSMg01no385_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:24 2005
(455 letters)
>mm_chr6_7727160_7728014
Length = 855
Score = 849 bits (439), Expect = 0.0
Identities = 451/455 (99%)
Strand = Plus / Plus
Query: 1 tagagactggtccattgcctctgcacagcatctgcatccacagtgagttggcacaagcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagagactggtccattgcctctgcacagcatctgcatccacagtgagttggcacaagcat 260
Query: 61 ccttggaggatgagggaggataccagtgtatgagccgggaggaataatcactcagatcct 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 ccttggaggatgagggaggataccagtgtgtgagccgggaggaataatcactcagatcct 320
Query: 121 catctcagatggaggctgcaacagatgagtggacgtccctggggagatggcagggaagaa 180
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 321 catctcagatggaggctgcaacagatgaatggacgtccctgaggagatggcagggaagaa 380
Query: 181 gggaatgttgtcttcaggaggaaggagcgctccctgctcctttgtgctagcacagaggct 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggaatgttgtcttcaggaagaaggagcgctccctgctcctttgtgctagcacagaggct 440
Query: 241 gagttgaaatgctttggggatgaagactagaaagagagggtgtctgttttcttagtaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagttgaaatgctttggggatgaagactagaaagagagggtgtctgttttcttagtaaag 500
Query: 301 gattccttgctaaggacaaaccaaagaattgctcttcttccttaggagacagagggactg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gattccttgctaaggacaaaccaaagaattgctcttcttccttaggagacagagggactg 560
Query: 361 aagcgacacccttgcagaagtggtcatccttgtccatcgggcagtagccatgactgtggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagcgacacccttgcagaagtggtcatccttgtccatcgggcagtagccatgactgtggc 620
Query: 421 tgttagtggttcctaggtgctttctcttcctgttg 455
|||||||||||||||||||||||||||||||||||
Sbjct: 621 tgttagtggttcctaggtgctttctcttcctgttg 655
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space: 376025
Effective search space used: 376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
