BAC Information

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BAC

Clone NameMSMg01-385M23
Chromosome6 (Build37)
Map Location 110,232,686 - 110,233,182
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385M23.T7 (MSMg01no385_m23.b1)MSMg01-385M23.TJ (MSMg01no385_m23.g1)
ACCAG488923AG488924
length759751
length of high quality
(start - end)
494 (32 - 525)500 (64 - 563)
definitionCHROMAT_FILE: MSMg01no385_m23.b1 PHD_FILE: MSMg01no385_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:29 2005CHROMAT_FILE: MSMg01no385_m23.g1 PHD_FILE: MSMg01no385_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCGCTATACGACTCACTATTTCCAGAGGATCCGCGGAATTCTCACCTG
TACAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTA
ATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTTCACCTCACACC
AGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTG
GATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTT
GTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACAT
AGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAG
ATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCC
TTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGA
GGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAG
CTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTG
GAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGAAACTCACACAA
TATGTACTCACTGATAAGGGATATTAGCCCCCAACCTAGGATACCCAGAT
ATAGGATATATTTGCTTAACCCCTGAAACTCCCAAAAATGAAAATGGAAT
GGGGACCTTTGGCCCCCCTTAAATTTGGGAACAAAACCCTTGGAGGAGTT
CCAAAACAA
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXATTTCATTTGTGAAAAGAAAGAGGAAAGATATTTAAA
CAAGAGAACTGCTAGTTTAGTTGATGAGTAGAAAACCTCCCACCATTTGA
CTATAATGAAAAAAAAAACAAAACAAAGCTGGATTTTAAAATAATTTTGT
GATTTCTGTACCAGAGGGTAAAAAGTAAAAAGAACATTTTCTAAAACAAG
AACCATTCACAAGATTTCCCTCCCCACAATGACAAATACTCAGTTGCAGA
GAACGCATTTTATCTCATGTTTCTTAATAAACATTGAGTTTTAGATAAAC
CCATATTCTTGCATAAAATTAGAAATATTAAACACATGCCCTCCAGCAAA
GAAAATTACTCCATTTTTGTTTTACTTTGCAATAACAAGTAATTTATTTT
ATTGGGGCATAGTTAATGTGCTAGATGTAGCTTGCATTAAACAAGTACAT
TAAATCAAATAGAAAATAAATGGAAATATCTTTTTGTCATTCTTACTAAT
AACAAACAATTAGAGTATTTATGAAGATGTTTTGGATAAGTATGTTTTTA
ATTTGGCACCTTAAAAGTTTGTCTTCTGATTAAGAAATTTGGGGGAGTGT
TGGGGTTATCTGTGGGGGGGGGAGAGGAATCGAGGAACACCTGCTGTAAG
GGAAAAAAGCCCCCTTTGAGGGGTTCCCTGAAGGGTTCCCCACAAAAAAT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_m23.g1 MSMg01no385_m23.g1 CHROMAT_FILE:
MSMg01no385_m23.g1 PHD_FILE: MSMg01no385_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:29 2005
         (500 letters)



>mm_chr6_110232486_110233382
          Length = 897

 Score =  928 bits (480), Expect = 0.0
 Identities = 494/500 (98%), Gaps = 3/500 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttcatttgtgaaaagaaagaggaaagatatttaaacaagagaactgctagtttagttg 60
           |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 atttcatttgtgaagagaaagaggaaagatgtttaaacaagagaactgctagtttagttg 260

                                                                       
Query: 61  atgagtagaaaacctcccaccatttgactataatgaaaaaaaaaacaaaacaaagctgga 120
           |||||||||||||||||||||||||||||||||||   |||||||||||||||| |||||
Sbjct: 261 atgagtagaaaacctcccaccatttgactataatg---aaaaaaacaaaacaaaactgga 317

                                                                       
Query: 121 ttttaaaataattttgtgatttctgtaccagagggtaaaaagtaaaaagaacattttcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttttaaaataattttgtgatttctgtaccagagggtaaaaagtaaaaagaacattttcta 377

                                                                       
Query: 181 aaacaagaaccattcacaagatttccctccccacaatgacaaatactcagttgcagagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aaacaagaaccattcacaagatttccctccccacaatgacaaatactcagttgcagagaa 437

                                                                       
Query: 241 cgcattttatctcatgtttcttaataaacattgagttttagataaacccatattcttgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cgcattttatctcatgtttcttaataaacattgagttttagataaacccatattcttgca 497

                                                                       
Query: 301 taaaattagaaatattaaacacatgccctccagcaaagaaaattactccatttttgtttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 taaaattagaaatattaaacacatgccctccagcaaagaaaattactccatttttgtttt 557

                                                                       
Query: 361 actttgcaataacaagtaatttattttattggggcatagttaatgtgctagatgtagctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 actttgcaataacaagtaatttattttattggggcatagttaatgtgctagatgtagctt 617

                                                                       
Query: 421 gcattaaacaagtacattaaatcaaatagaaaataaatggaaatatctttttgtcattct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gcattaaacaagtacattaaatcaaatagaaaataaatggaaatatctttttgtcattct 677

                               
Query: 481 tactaataacaaacaattag 500
           ||||||||||||||||||||
Sbjct: 678 tactaataacaaacaattag 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 897
Length adjustment: 10
Effective length of query: 490
Effective length of database: 887
Effective search space:   434630
Effective search space used:   434630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)