BAC Information

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BAC

Clone NameMSMg01-385N23
Chromosome6 (Build37)
Map Location 18,752,430 - 18,752,793
singlet/doubletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2
Downstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385N23.T7 (MSMg01no385_n23.b1)MSMg01-385N23.TJ (MSMg01no385_n23.g1)
ACCAG488971AG488972
length763746
length of high quality
(start - end)		359 (35 - 393)480 (64 - 543)
definitionCHROMAT_FILE: MSMg01no385_n23.b1 PHD_FILE: MSMg01no385_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:33 2005CHROMAT_FILE: MSMg01no385_n23.g1 PHD_FILE: MSMg01no385_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCCTA
TCCCAAATGACCGGAACTGAGTGAAAAGACTAACCACTAAGCATTTCGGA
GTGGCTCCCTTTTCAGGGTGAAAATTGTATTTCTACCACTTTTGAAAAGA
AAACCAATATATCCAACCACTAAAAGGGTAAAAAGAAACGTTGAGTATAA
ACTGAGGGAAATAGTAATTGGGCAATGCACAGTTTTGTAATTAGTAGCAT
TTTACATAAGTAATATAAATGTACCACACAAAAATTAAATATCAACAAAT
ATATTTTTTAGCATTTGCTTATATTTCATTTGTTTCCTCAGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGAGTGTGTGTGTGAGTGTGTGTGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTTNNNNNNNNNTNTTTTTTTNNTTTN
NTTTTTTTTTTTTTTTTTNNTTTNTTTTNTNNNTTTTNNNTTTTTTTTTT
TTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTNTTTTNNNNT
TNTTTTTNNTTTTTTTTTNTTTNTTTTTTTTTTNTTTTTTTTTTTNTNTT
TTTTTNNTTTTTT

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXACTGTATTTTGTTTATTTCCATTTCATTAATTTCAGC
TTCAATTTTCAATCTCTTCCTGTATATTTTGGAAGAGTATTGTTTGTTTT
TTTTAAGGCCTTTGGGAATATCATGAATTTATTAATATTTACCTTTCTCT
TTATGTTATGTAAACCTCTAGTACCATGAACATTCCTCTTAGAACTGTCT
TCATTTTGTCCCATAGTCCTTAGCATACTTTATTTTCACTTTGTTCAATT
CTAAAAGTTTTCAAATATCATTCTTGGTTCAATTATCATTCTACATTATA
TTTACTAGTCTCCATGAGTTTCTACACTTTTTTTTAGTTTCTATTGCTGT
TGCTATACAGATTTATTCTATTGTGGCCAGATAGAATATAAAAATATTAT
TTCAATTCTCATGTATATATTAAGACTTTTTTGTGTTCTTATTAGCTTGT
GTTTGATAAGGCTTATATGTGGCAGGCTTTGGAGAAAGTTTGATGGGATA
CTGAGAAGACTTTATGTTCTCTAATGTTAGGTGGAACATTCTACATGTAT
TTGTTAGGNACCCTAAATTTATAATGTCATTTAGCTCCCAATTTCCGGTT
AATTTTTGTCCCGAAAACTGACCAATTGAAATTTTGGATTGGAATTTCCC
CCTATACTGGACAGGGAAAAAAGGGGTTTTAAAAAAAAGGGCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_n23.b1 MSMg01no385_n23.b1 CHROMAT_FILE:
MSMg01no385_n23.b1 PHD_FILE: MSMg01no385_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:33 2005
         (359 letters)



>mm_chr6_18752342_18753101
          Length = 760

 Score =  572 bits (296), Expect = e-168
 Identities = 344/366 (93%), Gaps = 16/366 (4%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattcctcctatcc-caaatgaccggaactgagtgaaaagactaaccactaagcatttcg 64
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aattcctcctaaccacaaatgaccggaactgagtgaaaagactaaccactaagcatttcg 393

                                                                       
Query: 65  gagtggctcccttttcagggtgaaaattgtatttctaccacttttgaaaagaaaaccaat 124
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 392 gagtggctcccttttcagggtgaaaattgtatttctaccacatttgaaaagaaaactaat 333

                                                                       
Query: 125 atatccaaccactaaaagggtaaaaagaaacgttgagtataaactgagggaaatagtaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 332 atatccaaccactaaaagggtaaaaagaaacgttgagtataaactgagggaaatattaat 273

                                                                       
Query: 185 tgggcaatgcacagttttgtaattagtagcattttacataagtaatataaatgtaccaca 244
           ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 272 tggacaatgcacagttttgtaactagtagcattttacataagtaatataaatgtaccaca 213

                                                                       
Query: 245 caaaaat---------ta--aatatcaacaaatatattttttagcatttgcttatatttc 293
           |||||||         ||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 caaaaatatcaacaaatattaatatcaacaaatatattttttagcatttgcttatatttc 153

                                                                       
Query: 294 atttgtttcctcagtgtgtgtgtgtgtgtgtgtgtgtgtgtg-agtgtgtgtgtga-gtg 351
           |||||||||||||||||||||||||||||||||||||||||| | ||||||||| | |||
Sbjct: 152 atttgtttcctcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgta-tgtgtgtgt-atgtg 95

                 
Query: 352 tgtgtg 357
           ||||||
Sbjct: 94  tgtgtg 89


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 760
Length adjustment: 9
Effective length of query: 350
Effective length of database: 751
Effective search space:   262850
Effective search space used:   262850
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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