Query= MSMg01no386_b21.b1 MSMg01no386_b21.b1 CHROMAT_FILE:
MSMg01no386_b21.b1 PHD_FILE: MSMg01no386_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:52 2005
(715 letters)
>mm_chr6_29544575_29545690
Length = 1116
Score = 1234 bits (638), Expect = 0.0
Identities = 684/712 (96%), Gaps = 23/712 (3%)
Strand = Plus / Minus
Query: 5 gaattctctttgtgttactgtggattctggagagtgatttcaggtcacatacc------- 57
||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 709 gaattctctttgtgttaatgtggattctggagagtgatttcaggtcacataccttttttt 650
Query: 58 tttttttttttctttttttaattacattttgacagaaggtcttgctaagttgttcaggtc 117
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tttttttttttccttttttaattacattttgacagaaggtcttgctaagttgttcaggtc 590
Query: 118 atcttgaacgttccattctcttgcctcactttctcagtcttaagcactagtattttagac 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 atcttgaacgttccattctcttgcctcactttctcagtcttaagcactagtattttagac 530
Query: 178 gtgcacaaccttgcctggtattcaaaggatattaaaaacaaacaacaagtattat-aaaa 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 529 gtgcacaaccttgcctggtattcaaaggatattaaaaacaaacaacaagtattataaaaa 470
Query: 237 aattctaggaaaataaatccctttgccgtttatgtttgccatttctgttcacaagttaac 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aattctaggaaaataaatccctttgccgtttatgtttgccatttctgttcacaagttaac 410
Query: 297 caatttgcccaagg------------ttatttatttatttatttatttggttcccttctt 344
|||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 409 caatttgcccaaggctatttatttatttatttatttatttatttatttggttcccttctt 350
Query: 345 catttttatccatttatttatttatttttatgcgcgtatatgtgttttgtctgaaagtat 404
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 349 catttttatccatttatttatttatttttatgtgtgtatatgtgttttgtctgaaagtat 290
Query: 405 gtctgtatcatacatgtgcctggtgcctgcagaggcatgaaggcatcagatccccaagac 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gtctgtatcatacatgtgcctggtgcctgcagaggcatgaaggcatcagatccccaagac 230
Query: 465 tggagtacagacagttgtgagtatctgtgggggctgggaatcgatcctaggtcttaacta 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 tggagtacagacagttgtgagtatctgtgggggctgggaatcgatcctaggtcttaacta 170
Query: 525 ctgagccacctccagctccttctctcctttatttcttaaatagttaagtaagaaatataa 584
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 169 ctgagccacctccagctc---ctctcctttatttcttaaatagttaagtaagaaatataa 113
Query: 585 ataactaaagcaatatgcagatgctcatgcaccataaccccagtatctgagagactaagg 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 ataactaaagcaatatgcagatgctcatgcaccataaccccagtatctgagagactaagg 53
Query: 645 cctgaggcagatgagttgccatgagttcaaggccaatttgggttacagagtg 696
|||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 52 cctgaggcagatgaattgccatgagttcaaggccaatttgggttacagagtg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 715
Length of database: 1116
Length adjustment: 10
Effective length of query: 705
Effective length of database: 1106
Effective search space: 779730
Effective search space used: 779730
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no386_b21.g1 MSMg01no386_b21.g1 CHROMAT_FILE:
MSMg01no386_b21.g1 PHD_FILE: MSMg01no386_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:52 2005
(684 letters)
>mm_chr6_29362415_29363495
Length = 1081
Score = 1257 bits (650), Expect = 0.0
Identities = 674/688 (97%), Gaps = 11/688 (1%)
Strand = Plus / Plus
Query: 1 tgtggaggagttgctggtgaagtggacacagggcatgtagaaagagctgcttgtgagata 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 tgtggaggagttgctggtgaagtggacccagggcatgtagaaagagctgcttgtgagata 260
Query: 61 gccacagttgccttttattttaaaccagaaaatcagtctacagacaggaatcctgttgct 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccacagtttccttttattttaaaccagaaaatcagtctacagacaggaatcctgttgct 320
Query: 121 tccttcaggaggaagtctcccaaggtcagggtgtcaagcctgttaaggataggtctgttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccttcaggaggaagtctcccaaggtcagggtgtcaagcctgttaaggataggtctgttt 380
Query: 181 ggttctccctggctgggatgaagtcagggtcggaaaggtaagggcggaaagatcaatagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggttctccctggctgggatgaagtcagggtcggaaaggtaagggcggaaagatcaatagt 440
Query: 241 gaggcggtagttgtacatggcatgatggctctgccttccttacccagaattcagggatac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggcggtagttgtacatggcatgatggctctgccttccttacccagaattcagggatac 500
Query: 301 acctccagcttcaggagatgaagggattgtatcagttcagcagggatgagctggagcgcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acctccagcttcaggagatgaagggattgtatcagttcagcagggatgagctggagcgcc 560
Query: 361 agaagcacatgtatgaccagctggagcaggacttcctgctctgccagcaggagctgacag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaagcacatgtatgaccagctggagcaggacttcctgctctgccagcaggagctgacag 620
Query: 421 agctcaagtccagccagtccctctgtgaagagaatggaaactgctcaaacaaggtaattg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agctcaagtccagccagtccctctgtgaagagaatggaaactgctcaaacaaggtaattg 680
Query: 481 tacttcagagtgctaagggcttctggccagcttgggagagaggagaagcagacaagggaa 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tacttcagagtgctaagggcttctggccagcttgggagagaggagaagcagacaagg--- 737
Query: 541 gaagtcgcccaactgaaggtagaagacaaaggcagacccatgtctgctggccttcaaaca 600
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 738 ----tcgcccaactgaaggtagaagacaaaggcagacccatgtctgctggccttaaaaca 793
Query: 601 gt----cttgaacttgacttgaataagaaccatagcttagtagatgaatgcgtttgatct 656
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 gttcgtcttgaacttgacttgaataagaaccatagcttagtagatgaatgcgtttgatct 853
Query: 657 caggcagtatgaacatgtggtttttata 684
||||||||||||||||||||||||||||
Sbjct: 854 caggcagtatgaacatgtggtttttata 881
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1081
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1071
Effective search space: 721854
Effective search space used: 721854
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
