Query= MSMg01no386_e21.b1 MSMg01no386_e21.b1 CHROMAT_FILE:
MSMg01no386_e21.b1 PHD_FILE: MSMg01no386_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:05 2005
(658 letters)
>mm_chr6_97172263_97173319
Length = 1057
Score = 1183 bits (612), Expect = 0.0
Identities = 644/655 (98%), Gaps = 1/655 (0%)
Strand = Plus / Plus
Query: 1 gagcagtttggaatggaggggttaaatccctgtctgcattgaggtgcttacccacacaga 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagcagtttggaatgaaggggttaaatccctgtctgcattgaggtgcttacccacacaga 260
Query: 61 atgggtggactgtgaagcccagccctactgtgtctcctcccccacatctcccccatgact 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 atgggtggactgtgaagcccagccctaccgtgtctcctcccccacatctcccccatgact 320
Query: 121 atgctttcttgcttttttgaacctcagttttgtctcgtactgcacagtgggattgttttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgctttcttgcttttttgaacctcagttttgtctcgtactgcacagtgggattgttttc 380
Query: 181 gctcaccgtttaagatggcttcagaaactcacggtggcattctgaatgtttttacaatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctcaccgtttaagatggcttcagaaactcacggtggcattctgaatgtttttacaatca 440
Query: 241 agaacaaccccacctcaggaaaaggtttattatccaacagaatggggtaatttatacaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaacaaccccacctcaggaaaaggtttattatccaacagaatggggtaatttatacaaa 500
Query: 301 tatgttcatctcaagttgaaaacatatttcatatttttagcctgcataattaggtttgtg 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 tatgttcatctcaagttgaaaacatatttcatatttttagtctgcataattaggtttgtg 560
Query: 361 ttccacaaagaacagaatctcaaatgtcctgcctagtcttcgtcttctatcatcttcttc 420
||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct: 561 ttccacaaagaacagaatctcaaatgtcctgcctagtctccatcttctatcgtcttcttc 620
Query: 421 taagtactttccctttcccttttcctccccgtttcttattattcatggataaccagtaag 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 621 taagtactttccctttcccttttcctccccatttcttattattcatggataaccagtaag 680
Query: 481 taagcccacacccggcagggccccgtgaaagatgagtgtcttgtttacggaaaccactat 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taagcccacacccg-cagggccccgtgaaagatgagtgtcttgtttacggaaaccactat 739
Query: 541 tccaaaagtgggttttatcttgatgggtgtgactaaccgcccaaccattggcatctcaga 600
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 740 tccaaaagtgtgttttatcttgatgggtgtgactaaccacccaaccattggcatctcaga 799
Query: 601 ccataactgcttcccagattcttgccctcattgnaaaatgcacttagtcttgtgt 655
||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 800 ccataactgcttcccagattcttgccctcattggaaaatgcacttagtcttgtgt 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1057
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1047
Effective search space: 678456
Effective search space used: 678456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_e21.g1 MSMg01no386_e21.g1 CHROMAT_FILE:
MSMg01no386_e21.g1 PHD_FILE: MSMg01no386_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:05 2005
(654 letters)
>mm_chr6_97312923_97313976
Length = 1054
Score = 1065 bits (551), Expect = 0.0
Identities = 554/555 (99%)
Strand = Plus / Minus
Query: 100 tcatttgtctatgtcagcaggggatagtctggaatggagggtgtgtgggaggcatgcgcc 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 tcatttgtctatgtcagcaggggatagtctggaatggagggtgtgtgggaggcatgcgcc 995
Query: 160 atggtgcattggtgcctgcatggatgtgtagaagtcaaaggtggctggtagacagacgtc 219
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 994 atggtgcattggtgcctgcatggatgtgtggaagtcaaaggtggctggtagacagacgtc 935
Query: 220 taagtggcaatgcacctagctgtctgggcatgacggcacatgcctacaatcccagaacct 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 taagtggcaatgcacctagctgtctgggcatgacggcacatgcctacaatcccagaacct 875
Query: 280 gagagactgaagcagggggaaatcacaaaactaagaccttgtttccaccaaacaaaacct 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 gagagactgaagcagggggaaatcacaaaactaagaccttgtttccaccaaacaaaacct 815
Query: 340 caaacaaacatgcgcaaaagtgtgtgcctgtgctctgttcattttgctgtatctgtctca 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 caaacaaacatgcgcaaaagtgtgtgcctgtgctctgttcattttgctgtatctgtctca 755
Query: 400 aatgttaaaagtcatacatagttaagtgataaacttggagttatttttacaaaaataagt 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 aatgttaaaagtcatacatagttaagtgataaacttggagttatttttacaaaaataagt 695
Query: 460 agaaataagtagatgctgtgaagaagacaattagtataaaactaaatgcagtttgacgaa 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 agaaataagtagatgctgtgaagaagacaattagtataaaactaaatgcagtttgacgaa 635
Query: 520 cgtaaagcagtcagtacacagctataaacttaatttttctcaagagccaaagcatgacag 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 cgtaaagcagtcagtacacagctataaacttaatttttctcaagagccaaagcatgacag 575
Query: 580 cattttggctactgtgtatgtagctcaccatagttattaagatttcagtgaagcaggaag 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 cattttggctactgtgtatgtagctcaccatagttattaagatttcagtgaagcaggaag 515
Query: 640 aaccatagtcaacct 654
|||||||||||||||
Sbjct: 514 aaccatagtcaacct 500
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
