BAC Information

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BAC

Clone NameMSMg01-386N01
Chromosome6 (Build37)
Map Location 43,042,419 - 43,206,133
singlet/doubletdoublet
Overlap geneOlfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47
Upstream geneTas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V
Downstream geneArhgef5, Nobox, Tpk1, LOC665747, LOC546897, LOC665779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386N01.T7 (MSMg01no386_n01.b1)MSMg01-386N01.TJ (MSMg01no386_n01.g1)
ACCAG489695AG489696
length719725
length of high quality
(start - end)		617 (70 - 686)650 (76 - 725)
definitionCHROMAT_FILE: MSMg01no386_n01.b1 PHD_FILE: MSMg01no386_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:42 2005CHROMAT_FILE: MSMg01no386_n01.g1 PHD_FILE: MSMg01no386_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,205,581 - 43,206,133)(43,042,419 - 43,043,085)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGG
AATTCATCTCTTGACGAGACTGTCACATCTATTTCAAACTCTTGGTTTCT
GTTCTATTTTCTGCATTTTCCTATTTTTTAAAATCTGTCTTAACTTTATG
TTGTCAAATGTATATGTAACTTTGTATACATGTTTGTGAGTCATAGTTTT
CCTGTAGAAGGACATACATATGGAGGTGTTTATAGTAACTTGCAATGACA
GAAAAGGGAAGTCTCCAGAAGTTTTTATTGTGGGAATATAAAGTCAAATG
CTAAAAATAAATAAATAAATAATTTTAAAGTCAAATGCTGTTTTTATATA
CACACTTCTTTTTCCTTCTTGTTGGGGTAAACTGGAAACCTGCCTTTTGT
CCATCCCATCATATCACTTAAAGAATAAGTTGGGCCCTCTTTCTGTCCCC
TATTCTAGGGGGTGAGTGTAATATGAAACAAAGACTATTAATTAGATACT
GTTTATTTTGTAAATGGAAGCAATCTTGTTTTCTGCTCCTGCTGTTCTGA
CCTTACCTCCCCCTTTTACCTATAGAGAATTGCTGGGTTTATTCTTTATC
TACAGGGCCTGATGTCTATACCTGGATGGCTTTCTTTGCCAAACCCCCGG
GGTCTTCACCTTAGTACGAAAGACCTCTTTTGCACCCTATTCCCTGCTCT
TCCATGCTGTTTTTCCAAA

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGACAGGGCTACAAAGAGA
AACCCTGTCTTGAACAACAAAAATAAAAAACAAACAAAGAAAAAAATTGA
AAAAACAAAACAAAAAAAAGTTAAGCTAATATCAGTCACAAAATACATGA
ATACATGTAAAACTAGAATACAGATATGAAAACGTAGGTATAGTCACATG
GCCAAATGACTGCAACACTTATGTGACAGGAGCCCTGGAAGACACAACAC
AAGGAAGTGTAGCACCCAGAAGAAAGACAGCAGTTACAAATAAATGGAGA
GAATGAATATTTATTGAGAATTTATTTTGTATTTACCTTATTCTCTTTAA
AGAGTATATTTTTAGCATACAGAGTCATGTCATTTTCAATTGAAGAAGGA
TCTTCAGTTTGCTTTAGTATACATTAATCTTGCATTTGCCTTTTTTATTT
ATGACAGATTTATGCGCATATGCAATACAATGTACCATAGTGCCATCAGT
GTCCATAATACTCACTTATGCCTCTCTCTCTCTTTTTGTCTTTTTTTATT
AGATATTTACTTTGTTTACATTTCAAATGTTGTCCCCTTTCCTGATTTCT
TCTCCAAAAACCCCCTATCTTCTTCTCCCTGCCCTTTCTTACCAACCCAC
CCACATCTGCTTCCTGGCCCTGGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_n01.b1 MSMg01no386_n01.b1 CHROMAT_FILE:
MSMg01no386_n01.b1 PHD_FILE: MSMg01no386_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:42 2005
         (617 letters)



>mm_chr6_43205121_43206133
          Length = 1013

 Score =  870 bits (450), Expect = 0.0
 Identities = 540/596 (90%), Gaps = 46/596 (7%)
 Strand = Plus / Minus

                                                                        
Query: 24   tggtttctgttctattttctgcattttcctattttttaaaatctgtc-ttaactttatgt 82
            ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 1013 tggtttctgttctattttctgcattttcctatttttttaaatctgtctttaactttatgt 954

                                                                        
Query: 83   tgtcaaatgtatatgtaactttgtatacatgtttgtgagtcatagttttcctgtagaagg 142
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953  tgtcaaatgtatatgtaactttgtatacatgtttgtgagtcatagttttcctgtagaagg 894

                                                                        
Query: 143  acatacatatggaggtgtttatagtaacttgcaatgacagaaaagggaagtctccagaag 202
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 893  acatacatatggaggtgtttatagtaacttgcaatgacagaaaagggaagtctccagaaa 834

                                                                        
Query: 203  tttttattgtgggaatataaagtcaaatgctaaaaataaataaataaataattttaaagt 262
            |||| ||||||||||||                                     ||||||
Sbjct: 833  ttttgattgtgggaata-------------------------------------taaagt 811

                                                                        
Query: 263  caaatgctgtttttatatacacacttctttttccttcttgttggggtaaactggaaacct 322
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 810  caaatgctgtttttatatacacacttctttttccttctagttggggtaaactggaaacct 751

                                                                        
Query: 323  gccttttgtccatcccatcatatcacttaaagaataagttgggccctctttctgtcccct 382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750  gccttttgtccatcccatcatatcacttaaagaataagttgggccctctttctgtcccct 691

                                                                        
Query: 383  attctagggggtgagtgtaatatgaaacaaagactattaattagatactgtttattttgt 442
            ||||||    ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690  attcta----gtgggtgtaatatgaaacaaagactattaattagatactgtttattttgt 635

                                                                        
Query: 443  aaatggaagcaatcttgttttctg-ctcctgctgttctgaccttacctcccccttttacc 501
            |||||||| ||||||||||||||| | ||||||||||||||| |||||||||||||||||
Sbjct: 634  aaatggaaacaatcttgttttctgtc-cctgctgttctgaccctacctcccccttttacc 576

                                                                        
Query: 502  tatagagaattgctgggtttattctttatctacagggcctgatgtctatacc-tggatgg 560
            | |||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||
Sbjct: 575  tgtagagaattgctgggtttattcttcatctacagggcctgatgtctataccat-gatgg 517

                                                                    
Query: 561  ctttctttgccaaacccccggggtcttcaccttagtacgaaagacctcttttgcac 616
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 516  ctttctttgccaaacccccggggacttcaccttagtacgaaagacctcttttgcac 461


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1013
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1003
Effective search space:   608821
Effective search space used:   608821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no386_n01.g1 MSMg01no386_n01.g1 CHROMAT_FILE:
MSMg01no386_n01.g1 PHD_FILE: MSMg01no386_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:42 2005
         (650 letters)



>mm_chr6_43042248_43043297
          Length = 1050

 Score =  859 bits (444), Expect = 0.0
 Identities = 600/696 (86%), Gaps = 75/696 (10%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagacagggctacaaagagaaaccctgtcttgaacaacaaaaataaaaaacaaac 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 caggacagacaaggctacaaagagaaaccctgtcttgaacaacaaaaataaaaaacaaac 231

                                                                       
Query: 61  aaaga---aaaaaattgaaaaaacaaaacaaa--aaaaagttaagctaatatcagtcaca 115
           ||| |   ||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 232 aaacaaagaaaaaattgaaaaaacaaaacaaaacaaaaagttaagctaatatcagtcaca 291

                                                                       
Query: 116 aaatacatgaatacatgtaaaactagaatacagatatgaaaacgtaggtatagtcacatg 175
           |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 292 aaatacatgaatacatgtaaaactagaatacagatatgaaaatgtagttatagtcacatg 351

                                                                       
Query: 176 gccaaatgactgcaacacttatgtgacaggagccctggaagacacaacacaaggaagtgt 235
            | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 actaaatggctgcaacacttatgtgacaggagccctggaagacacaacacaaggaagtgt 411

                                                                       
Query: 236 agcacccagaagaaagacagcagttacaaataaatggagagaatgaatatttattgagaa 295
           ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 412 agcacacagaagaaagacagcagttacagataaatggagagaatgaatatttattgagaa 471

                                                                       
Query: 296 tttattttgtatttaccttattctctttaaagagtatatttttagcatacagagtcatgt 355
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tttattttttatttaccttattctctttaaagagtatatttttagcatacagagtcatgt 531

                                                                       
Query: 356 catttt------------------------caattgaagaaggatcttcagtttgcttta 391
           ||||||                        ||||||  ||||||||||||||||||||||
Sbjct: 532 catttttagcatacagagtcatgtcattttcaattggtgaaggatcttcagtttgcttta 591

                                                                       
Query: 392 gtatacattaatcttgcatt-tgccttttttatttatgacagatttatgcgcatatgcaa 450
           ||  ||||||||||||| || |||| |||||||||||||||||||||||| | |||||||
Sbjct: 592 gtgcacattaatcttgc-ttatgccatttttatttatgacagatttatgcacgtatgcaa 650

                                                                       
Query: 451 tacaatgtaccatagtgccatcagtgtccataatactcacttatgcctctctctctct-t 509
           ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 651 tacaatgtaccgtagcgccatcagtgtccataatactcacttatgcctctctctctctct 710

                                                                       
Query: 510 ---------------tttgtctttttttattagatatttactttgtttacatttcaaatg 554
                          |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 711 ctgtctctctctctctttgtctttttt-attagatatttactttgtttacatttcaaatg 769

                                                                       
Query: 555 ttgtcccctttcctgatttcttctccaaaaaccccctatcttcttctccctgccctttct 614
           ||||||||                           ||||| |||||||||||||||||||
Sbjct: 770 ttgtcccc---------------------------ctatcctcttctccctgccctttct 802

                                               
Query: 615 taccaacccacccacatctgcttcctggccctggca 650
           |||||||||||||||| |||||||||||||||||||
Sbjct: 803 taccaacccacccacacctgcttcctggccctggca 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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