BAC Information

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BAC

Clone NameMSMg01-387F24
Chromosome6 (Build37)
Map Location 16,293,492 - 16,293,901
singlet/doubletsinglet
Overlap genenone
Upstream geneFoxp2, Mdfic, LOC100041116
Downstream geneTcfec, EG435881, Tes, EG232599, Cav2, Cav1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387F24.T7 (MSMg01no387_f24.b1)MSMg01-387F24.TJ (MSMg01no387_f24.g1)
ACCAG490122AG490123
length765781
length of high quality
(start - end)		414 (45 - 458)393 (77 - 469)
definitionCHROMAT_FILE: MSMg01no387_f24.b1 PHD_FILE: MSMg01no387_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:25 2005CHROMAT_FILE: MSMg01no387_f24.g1 PHD_FILE: MSMg01no387_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTCTATTCCTAGACACTAATAACACTTCATTATGAGCAATCCATT
TTAAAGATTATATGGTTCTGTATCCACGTGAATGTTAACATACCTGGAAT
TCTGTAAGTGAAAGGCGTTTTTAGACCCTTTTAAAGTAACATTAAGTAAA
GTTTCTACCTTTGTGTGTCTAGAGCAGGGGCTTGAGGTTCTTCAGTGAAA
GAGAAGGCATTGCTCAAAGCTTGTGCATACTTGGTAAAAACACAACAAAA
CAAAACAAAAAACCAAACAGGCATGGGCCTATGTGCCTGCCCCCCAACCC
CCTCCCACCACCAGAGTGCAGGGCACACTGTGTCCTGCTAGCATGTGCAT
GTGAAGTCTTCTGTCTTATTGGTTCTCATTGGGATGTGGATTACGGTGCA
TTGCCTGTTTGAAATGTATTATTCTGAAATGATGAGATGAGCTCACCGCA
TTGAANGTTACATCCTTTCATTTTTAAGCCCATTTTTGACGCTTACAACC
TTCTGATACTACCAGGAAGACGAGTACCTGTCCGGCCCTCTGCCCCCTCA
GAGGATTTTCTTAACCCCCCCCCCCGCCAGGAGGATTAATTCTTACCCAC
CTTCAAACAACTGGTCCCCACTCCANCCAAGCCCTCACCCCTTTTTTTAT
AACTATTACCCCCCTTCCCCACATTTCTTTCCCCCTCGTCTCCCCTCCCC
TTTCTCCCATATCTN

NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGTT
GAGAAACACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGAGTCCATCTCACACCAGTCAAAATGACTAAGA
TAAAAAATTCAGGTAACAGCAAATGCTGGTGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGTATC
CCACAATACCTCTCCTCGTCATATATCCAGATGATGCCCCAACTGGTAAG
AAAGAAACATGTTCCACTATGTTCATAGCAGCCATATTTATAATAGCCAG
AAGCTGGAAAGAAACCAGATGCCACTCAACAGAGGAATGGATACNGAAAA
TGTGGGACATTTACCCAATGGAGTACTACTCACCTATTAAAAAGATGGAT
TTATGAAATTCCCAAGCAAATGGTTGGGGCCTGGAGGGCATTCTTCCTAA
TGGAGGAAACCCATTCCCAAAAAACTCCAAGGGATGGTTTTCCTTGAAAA
AACAGAAATTTTCCCCATCTTTAATTCCCCCCAAATAGGTTCCCCTTGTC
AAACCTCGAACTCTTGATAAAAAAACCATCATGGGGGCCCTTTGCCCTTC
TCTTTATTTGGGCAAAATCCCCCCCGTGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_f24.b1 MSMg01no387_f24.b1 CHROMAT_FILE:
MSMg01no387_f24.b1 PHD_FILE: MSMg01no387_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:25 2005
         (414 letters)



>mm_chr6_16293460_16294273
          Length = 814

 Score =  762 bits (394), Expect = 0.0
 Identities = 406/410 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttctattcctagacactaataacacttcattatgagcaatccattttaaagat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gaattccttctattcctagacactaataacacttcattatgagcaatccattttaaagat 383

                                                                       
Query: 65  tatatggttctgtatccacgtgaatgttaacatacctggaattctgtaagtgaaaggcgt 124
           |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 382 tatatggttctgtatccatgtgaatgttaacatacctggaattccgtaagtgaaaggcgt 323

                                                                       
Query: 125 ttttagacccttttaaagtaacattaagtaaagtttctacctttgtgtgtctagagcagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttttagacccttttaaagtaacattaagtaaagtttctacctttgtgtgtctagagcagg 263

                                                                       
Query: 185 ggcttgaggttcttcagtgaaagagaaggcattgctcaaagcttgtgcatacttggtaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ggcttgaggttcttcagtgaaagagaaggcattgctcaaagcttgtgcatacttggtaaa 203

                                                                       
Query: 245 aacacaacaaaacaaaacaaaaaaccaaacaggcatgggcctatgtgcctgccccccaac 304
           |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 202 aacacaacaaaacaaaacaaaaaaacaaacaggcatgggcctgtgtgcctgccccccaac 143

                                                                       
Query: 305 cccctcccaccaccagagtgcagggcacactgtgtcctgctagcatgtgcatgtgaagtc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 cccctcccaccaccagagtgcagggcacactgtgtcctgctagcatgtgcatgtgaagtc 83

                                                             
Query: 365 ttctgtcttattggttctcattgggatgtggattacggtgcattgcctgt 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82  ttctgtcttattggttctcattgggatgtggattacggtgcattgcctgt 33


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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