BAC Information

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BAC

Clone NameMSMg01-387I03
Chromosome6 (Build37)
Map Location 141,760,080 - 141,760,429
singlet/doubletsinglet
Overlap geneSlco1a4
Upstream geneLOC664875, Pde3a, Slco1c1, Slco1b2, EG435927
Downstream geneLOC100042750, EG664913, Slco1a1, EG625716, Slco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8, Abcc9, 5330439B14Rik, Cmas, Gm766
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387I03.T7 (MSMg01no387_i03.b1)MSMg01-387I03.TJ (MSMg01no387_i03.g1)
ACCAG490224AG490225
length766791
length of high quality
(start - end)
353 (68 - 420)233 (83 - 315)
definitionCHROMAT_FILE: MSMg01no387_i03.b1 PHD_FILE: MSMg01no387_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:34 2005CHROMAT_FILE: MSMg01no387_i03.g1 PHD_FILE: MSMg01no387_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAATGAGTATTACGGAAGTGGGGTTTTACATTCTTAGATGGGTATGGA
GATTTTAGAACTGGAAGGAACACTACTGCAATAAACCACTGTGAAACATA
TCTCTGAAACTTTCTTACTTTTTGGTAGAGTTGAGTATCTATCATTATAT
TCATGTACCTCCTTGTTAGAGAGTATGCTATTGCATTGTTTGTTGTTATT
ACTGCTGTTGTTGTTCAAGATAGATTGAGATCCAGATGTCAAGGGAGCCT
AGTCCCTTTCACATACAGAGTTTTACTCTCAACAAGTCAGGTAGCTGCAC
CATAGGAAATTACCGATAAGCAACTACTCCGAAACTCCACAGAAAAGAAA
TTGACAGTAAACTTTACCTTATAGTTAAATTAGCAGTGCCTAATAAAGCA
GGGCTCAGAGTCTTGATAAATGTATGCTGGAGCATTGAGGTTCTAGGAAC
CATGACCGCTACGGCCATTTTTGCCAAAAGACACCTACCACTGACCAAAA
TTATCTACATGACCTTTGTGCGTACCGCCCCCCACCCCAAGGCCCCCCCC
GATGCCCCTCCCCCTACCTCCCCCCCCCCATGAGCACACGTTACCTCCTT
ACCCTTTCCCCCCCACCCCCTCTTCCCCCCCCTCGGCCCACTTGTCCATC
TTCCCCCTCCCGCCCCCTTTACCACCCTCATTATATTGCCCCCGCCCCCT
TCCCTCCCCCCCTCCC
CCCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATTATTTCCAAGACTT
TTAACATGAATGGGTGTTGGATTTTGTCAAATGCTTTTTCAGCATATAAT
GAGATGATCATGTGGATTTTTTTCTTTGAGTTTGTTTATTTAGTGGATTA
AATTGATGGATTTCTGTATATTCAACCATCCCTGTATCCCTGGGATGAAG
TCTACTTGATCATGGTAAGACTGTTTTGATGTATTCTTGGATTTGGTTTG
TGAGAATTTTATTGAGTATTTTTGCATTATTTTTTTTAAAGGAAATTGCG
CTGAAGTTCTCTTTCCTTGTTGTCCTCTTGTGCGTCTCGGGAGCGGGCCA
CCTGCTTCCCACCCTCATCGACTTACCGCCCCGCTCTTTCAGTCCTCATT
TTTGCCCCTCTTCTGCTTTTCAACCTCCCCCTTGCCTTCCTTTTTTCCTC
CCTCCTACTTCCTTCCTTCCTTCCCTCCCGTCTCTTCCCATACTTTTCTT
TTTTCCCCCCCTCCTCTCTCCCCTTATTCTCATCAACCTCCCCCCATTTT
TTCCCCCCCTTCTCCTTTTTCCAACCCTTTTTCCTCTCTCCTCCTTTCCC
CCTTTCTCCGATTCACCGCTCTGTCCTCCTCTCTCACGCTGCCTACTTGT
TGTCTTTCCCGCTGCTTTTTACTACTCTACTTGCGTCTTCCCTTTTTCAC
ACTTCTTACCTCTCTTTTTCTCTCCCGCTCCACTCCCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_i03.b1 MSMg01no387_i03.b1 CHROMAT_FILE:
MSMg01no387_i03.b1 PHD_FILE: MSMg01no387_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:34 2005
         (353 letters)



>mm_chr6_141759880_141760632
          Length = 753

 Score =  661 bits (342), Expect = 0.0
 Identities = 348/350 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtggggttttacattcttagatgggtatggagattttagaactggaaggaacactact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagtggggttttacattcttagatgggtatggagattttagaactggaaggaacactact 260

                                                                       
Query: 61  gcaataaaccactgtgaaacatatctctgaaactttcttactttttggtagagttgagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaataaaccactgtgaaacatatctctgaaactttcttactttttggtagagttgagta 320

                                                                       
Query: 121 tctatcattatattcatgtacctccttgttagagagtatgctattgcattgtttgttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctatcattatattcatgtacctccttgttagagagtatgctattgcattgtttgttgtt 380

                                                                       
Query: 181 attactgctgttgttgttcaagatagattgagatccagatgtcaagggagcctagtccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attactgctgttgttgttcaagatagattgagatccagatgtcaagggagcctagtccct 440

                                                                       
Query: 241 ttcacatacagagttttactctcaacaagtcaggtagctgcaccataggaaattaccgat 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 441 ttcacatacagagttttactctcaacaagtcaggtagctgcaccataggaaattagtgat 500

                                                             
Query: 301 aagcaactactccgaaactccacagaaaagaaattgacagtaaactttac 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagcaactactccgaaactccacagaaaagaaattgacagtaaactttac 550


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space:   255936
Effective search space used:   255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)