Query= MSMg01no387_o20.b1 MSMg01no387_o20.b1 CHROMAT_FILE:
MSMg01no387_o20.b1 PHD_FILE: MSMg01no387_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:07 2005
(363 letters)
>mm_chr6_77458663_77459426
Length = 764
Score = 629 bits (325), Expect = 0.0
Identities = 352/361 (97%), Gaps = 3/361 (0%)
Strand = Plus / Minus
Query: 5 gaattctcatcacatactctctctcagaaagctgtggagttttctctttcaaatctgact 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaattctcatcacatactctctctcagaaagctgtggagttttctctttcaaatctgact 505
Query: 65 tgaacctcctgggccatgtcttaggagactgaaacagaactcaacattatctttcaagct 124
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 504 tgaacctcctgggccatgtcttaggagactgaaacagaactcaacatcatctttcaagct 445
Query: 125 ggcctcactaactagtctcttggccaattccatcaggagattcttaataaacaaggtaaa 184
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 444 ggcctcactaactagcctcttggccaattccatcaggaaattcttaataaacaaggtaaa 385
Query: 185 atcatcaaagactttttaagctgtccctgatgttctggatgatcataaaaagaaatctca 244
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atcatcaaagactttttaagttgtccctgatgttctggatgatcataaaaagaaatctca 325
Query: 245 taaggaatatccttcatacttagtt-ggcccgtaccctctc-aaaaaataatggtggcga 302
||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||| ||
Sbjct: 324 taaggaatatccttcatacttagttgggcacgtaccctctcaaaaaaataatggtggtga 265
Query: 303 tatattttctcttgtgttccaagactctttttctagccccaaattcatatagaatttgga 362
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 264 tatattttctcttgtgttccaaga-tctttttctagccccaaattcatatagaatttgga 206
Query: 363 a 363
|
Sbjct: 205 a 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 764
Length adjustment: 9
Effective length of query: 354
Effective length of database: 755
Effective search space: 267270
Effective search space used: 267270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no387_o20.g1 MSMg01no387_o20.g1 CHROMAT_FILE:
MSMg01no387_o20.g1 PHD_FILE: MSMg01no387_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:07 2005
(463 letters)
>mm_chr6_77408260_77409124
Length = 865
Score = 841 bits (435), Expect = 0.0
Identities = 457/465 (98%), Gaps = 2/465 (0%)
Strand = Plus / Plus
Query: 1 aggatagaagaagttggtgttggtaaggaggatatcttccatgtgacagaaaatagagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 aggatagaagaagttggtgttggtaaggaggatatcttccatgtgacagaaaagagagta 260
Query: 61 tcagccaatgagcaatagaatcctgcttctattcaaatgtgctgagctgataagatgaca 120
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagccaacaagcaatagaatcctgcttctattcaaatgtgctgagctgataagatgaca 320
Query: 121 tttttaagtacaagggtggacctcagaacagcatagatcctgtgttttgaagatgcttcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttaagtacaagggtggacctcagaacagcatagatcctgtgttttgaagatgcttcg 380
Query: 181 aacatactttaaatatacccttatcatgataatggagagtaaaatactaacagtaaa--a 238
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 381 aacatactttaaatatacccttatcatgataatagagagtaaaatactaacagtaaacaa 440
Query: 239 aaaagacaaatgcccactaaaaggctgcagaaatgctaactacatatcctttgtaggcat 298
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaagacaattgcccactaaaaggctgcagaaatgctaactacatatcctttgtaggcat 500
Query: 299 tatgaatacttgaaagcttgaaaagttgcttgaaatacatttcttcatcagaaagtttcc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatgaatacttgaaagcttgaaaagttgcttgaaatacatttcttcatcagaaagtttcc 560
Query: 359 cctaatatattcatgaagaactgtcttgataagcatggagagaacccaagagctgggcct 418
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctaatatattcatggagaactgtcttgataagcatggagagaacccaagagctgggcct 620
Query: 419 tgtgttgtaatgggtggtctgtgcacctctgtagttgggttttac 463
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtgttgtaatgggtggtctgtgcacctctgtagttgggttttac 665
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 865
Length adjustment: 10
Effective length of query: 453
Effective length of database: 855
Effective search space: 387315
Effective search space used: 387315
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
