BAC Information

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BAC

Clone NameMSMg01-388D11
Chromosome6 (Build37)
Map Location 21,079,897 - 21,080,530
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040838
Downstream geneKcnd2, LOC100041343, Tspan12, LOC100041358, Ing3, A430107O13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388D11.T7 (MSMg01no388_d11.b1)MSMg01-388D11.TJ (MSMg01no388_d11.g1)
ACCAG490764AG490765
length1,417748
length of high quality
(start - end)
---639 (76 - 714)
definitionCHROMAT_FILE: MSMg01no388_d11.b1 PHD_FILE: MSMg01no388_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:30 2005CHROMAT_FILE: MSMg01no388_d11.g1 PHD_FILE: MSMg01no388_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTGCCAGCTGTGTATTTCTTNTATATATTTAAGATAGATAATGTCGCG
AATTTCTCTCTGTATTATGTTCTTTACTTATAGCGCGGTGAANGTGAAGT
AATACGTTGTGTGAGATGTAGGTCATATGGATCTGAGTGGACTAGAGAGG
AATGTCTAGGGGTAAGTGGCGTTGGTAGTGTGAGATGTTATGAATAGCTT
ATACATCAAAATCATCAATCTAATGCTGCACCAAGAAGTAATCTTATGCT
CTATCTCTTGACATCTNATAGCAATTGTAGAGTTTTCNTGTAGTGATTAG
TGCCTGTNATATTTGTAGTGTAATGAGAATGGTGNNANGTNAAGAGCGAG
TAGCGTAACCACTGTGAGACTTATCTCGATAGTAGTGATACGTCGTTGCT
TGCAGGCGACAGGATTATTGGACAAGAGGAAATAATAGTAATTACGAATG
ACGCACTGAATATTAGATTCTATTTATAAATTAAGAAGATGTTCATAGAT
ATATCGAACGCGAGATGTATGGGACGCGAGATACGATGTAGTTGAGACAA
CTGCGAGTAGAGTATACTCACCGCTGCGATGAACATCATCATACATCATT
GCATGTAAGTGGATAGCATTAGACTACGAACATAGGCGTGGATATATTAT
CGCTCGTATCTCGCGCAATACAGTTGTTTGTGCAGGTATATCAAAGACGT
GTCTACGCTGAGTGGTGAGAGGACGAACACATCTATCTACTGTTGTGAAT
CGAGGTACGATGTAATGTGCACTCAACTGTGATTGCTATAGGAACGCATA
TGTATATATTTGCAGAACGTATAATATTGAAGCAAGATATCTTCGGCGTG
GCTGATGTGTTGCACTGCTACCTACCGCTCTCTGACCATATTATATGGAC
TCGTTCAGTAGCTTTAATAGAGTCAAGAATCTTACGAGTATATACGAGAC
TCATAACGCAGCTCCTACATTATCTGCATAATTGCTTCTAATATATAGAG
ACCTGTCGAATACATATATTCTCACATCTATAACACATATCGCTTGATGT
TACATATCGCTTCANCCGTGTAATATACATAGTACACGAGTATCGTACAT
TATCTTCGGANGCCCGAAGTAAGGCTATACGTGTGTCTATGATATACGAT
ACCTGCAGGCGGGTATTTATCACTATCACTGTTGATACTCACAGATACTT
CTGATATATGCTTGTGATATATGCAGCTAATCTGTATGATGATGATGGCT
ATCGGCTGTCCGGTGACGGATCAGTCGCGACGATAGTTGATTTCATTCAC
GCTCGTTAGACAANATACTATGCTATGTGTAACGTATGACACATATGCGA
ACTAACATGTATTTATCCATCATGTGTCCGACATTCATCTTACATCGTCA
TTGTTTTATATTGTTGN
NNCCGATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTAAGAGCTAAAAATGATTTGGCTG
GGACTGGAAAAGAGGACTTCTTTTTCTTGTTTGTTTGCTTACTTGTTTTT
AAAGATTTATTTATTTAAACAAAATACAAAATGTTGTTCAGGTGTACAGA
AAAAAAAACAGTAAGCTAACTTTTATATACTAATAACAGATTTTTGGAAC
AACATTCTTTTTATGTTTGGTTTATAAATTTTATTTCCTAGTAAAAGGTA
TTCAAATATTTTATGATATTATAGGCTCTATGTTTCTATTTTATTATAAA
TATTATTACATGAAGAGGGACCCTCATTAAAAGATTTAAAGCTGCCTGGT
ACAGAAACTCAGATACTTTGTACTATGATAGGTGCTTTCTCATGCTAAAC
AAACATTTACACCTCTGCTTCATTCTCAGCCATGTTTTCCTTTTCCTTTT
TCCTTTTTTGGCAAGGTTTTTTTTTAATTATTATTATTAGATATTTTCTT
AATATACATTTCAAATGCTATCCTTAAAGTTCCCTATACCCTCTCCCTGC
CCTGCTCCCCTACCCACCTAATCCCACTTCTCGGCCCTGGTGTTCCCCTG
TACTGGGCATATAAAGTTTGCAAGACCAATGGGTCTCTCTTACCAATTCA
CTGTATATAATTGTATCTGTGAAACTTGAACTTACTTTGTAGTCCAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_d11.g1 MSMg01no388_d11.g1 CHROMAT_FILE:
MSMg01no388_d11.g1 PHD_FILE: MSMg01no388_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:30 2005
         (639 letters)



>mm_chr6_21079595_21080633
          Length = 1039

 Score = 1131 bits (585), Expect = 0.0
 Identities = 624/639 (97%), Gaps = 5/639 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaagagctaaaaatgatttggctgggactggaaaagaggacttctttttcttgtttgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 ctaagagctaaaaatgatttggctgggactggaaaagaggacttctttttcttgtttgtt 877

                                                                       
Query: 61  tgcttacttgtttttaaagatttatttatttaaacaaaatacaaaatgttgttcaggtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 tgcttacttgtttttaaagatttatttatttaaacaaaatacaaaatgttgttcaggtgt 817

                                                                       
Query: 121 acagaaaaaaaaacagtaagctaacttttatatactaataacagatttttggaacaacat 180
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 816 acagaaaaaaaaacagtaagctaacttttatatactaataac--atttttggaacaacat 759

                                                                       
Query: 181 tctttttatgtttggtttataaattttatttcctagtaaaaggtattcaaatattttatg 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tctttttatgtttggtctataaattttatttcctagtaaaaggtattcaaatattttatg 699

                                                                       
Query: 241 atattataggctctatgtttctattttattataaatattattacatgaagagggaccctc 300
           |||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 698 atattagaggctcaatgtttccattttattataaatattattacatgaagagggaccctc 639

                                                                       
Query: 301 attaaaagatttaaagctgcctggtacagaaactcagatactttgtactatgataggtgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 attaaaagatttaaagctgcctggtacagaaactcagatactttgtactatgataggtgc 579

                                                                       
Query: 361 tttctcatgctaaacaaacatttacacctctgcttcattctcagccatgttttccttttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tttctcatgctaaacaaacatttacacctctgcttcattctcagccatgttttccttttc 519

                                                                       
Query: 421 ctttttccttttttggcaaggtttttttttaattattattattagatattttcttaatat 480
           ||||||||||||||||||||||||||||||   |||||||||||||||||||||| ||||
Sbjct: 518 ctttttccttttttggcaaggttttttttt---tattattattagatattttctttatat 462

                                                                       
Query: 481 acatttcaaatgctatccttaaagttccctataccctctccctgccctgctcccctaccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 acatttcaaatgctatccttaaagttccctataccctctccctgccctgctcccctaccc 402

                                                                       
Query: 541 acctaatcccacttctcggccctggtgttcccctgtactgggcatataaagtttgcaaga 600
           ||||| |||||||||| |||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 401 acctactcccacttcttggccctggtgttcccctgtactgggcatgtaaactttgcaaga 342

                                                  
Query: 601 ccaatgggtctctcttaccaattcactgtatataattgt 639
           |||||||| ||||||||||||||||||||||||||||||
Sbjct: 341 ccaatgggcctctcttaccaattcactgtatataattgt 303


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)