Query= MSMg01no388_k19.b1 MSMg01no388_k19.b1 CHROMAT_FILE:
MSMg01no388_k19.b1 PHD_FILE: MSMg01no388_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:03 2005
(484 letters)
>mm_chr6_111574719_111575604
Length = 886
Score = 841 bits (435), Expect = 0.0
Identities = 472/485 (97%), Gaps = 7/485 (1%)
Strand = Plus / Plus
Query: 5 gaattcagggttttgctgtgctagaaccctgaacgaatgagctacaccccaaacctttct 64
||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 205 gaattaagggttttgccgtgctagaaccctgaacgaatgagctacaccccaaacatttct 264
Query: 65 ctcttatcagctgatttgctatttctaatattttcatcaaaaatgagttgactggcatcc 124
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcttatcagttgatttgctatttctaatattttcatcaaaaatgagttgactggcatcc 324
Query: 125 tctcgattcttttttcttccctgaaaacattgaagtctgatttttattatttctttcata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctcgattcttttttcttccctgaaaacattgaagtctgatttttattatttctttcata 384
Query: 185 aatgtttgataggacccaccaaagaaaacatctgggcctagattttttttttctcatgta 244
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 385 aatgtttgataggacccaccaaagaaaacatctgggcctagattttttttt-ctcatgta 443
Query: 245 gagata-atagactttctatttccctcatgagacttgtttgttcatttgtgtcttttggg 303
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 444 gagatacatagactttctatttccctcatgagacttgtttgttcgtttgtgtcttttggg 503
Query: 304 gaattcccctactttgccta-atccactttgtcactgtcatgatttaatagcagttccct 362
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaattcccctactttgcctaga-ccactttgtcactgtcatgatttaatagcagttccct 562
Query: 363 gttta--gagtaatgcccataaccagtgctctgttttgcatcatctcttcactaacaaat 420
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gtttatagagtaatgcccataaccagtgctctgttttgcatcatctcttcactaacaaat 622
Query: 421 acaacaaacaaacaaagaccaatgtttttttt-attttatataaaatatttttatatttt 479
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 623 acaacaaacaaacaaagaccaatgtttttttttattttatataaaatatgtttatatttt 682
Query: 480 atata 484
|||||
Sbjct: 683 atata 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 886
Length adjustment: 10
Effective length of query: 474
Effective length of database: 876
Effective search space: 415224
Effective search space used: 415224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_k19.g1 MSMg01no388_k19.g1 CHROMAT_FILE:
MSMg01no388_k19.g1 PHD_FILE: MSMg01no388_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:03 2005
(473 letters)
>mm_chr6_111676317_111677189
Length = 873
Score = 679 bits (351), Expect = 0.0
Identities = 416/445 (93%), Gaps = 15/445 (3%)
Strand = Plus / Minus
Query: 1 tcttggctttgctgtgcagagtttgaacaagtcctgtctttggaagtgagcaaagataaa 60
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 444 tcttggctttgctgtgcagagtttgaacaagtcctgtcattggaagtgagcagagataaa 385
Query: 61 atcagccagtttaggtcccatgtgcattctcctggccaatgagggaataccatgactgta 120
||||||||| ||| ||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 384 atcagccagcttatgtctcatgtgcattctcctggccaatgagggaagaccatgactgta 325
Query: 121 gactgtatggagaagggcatcctgctgaaggaagtgtgggtgacatgccacccaagagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 324 gactgtatggagaagggcatcctgctgaaggaagtgtgggtgacatgccacgcaagagga 265
Query: 181 aggaaagcataggttgttaagaacagcattctctccactaaagcttttcctttcctcatc 240
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 264 aggaaagcataggttgctaagaagagcattctctccactaaagcttttcctttcctcatc 205
Query: 241 ttta----tt----aa------ttgagttctctgtgtggccagctcctctgtttccattc 286
|||| || || |||||||||||||||||| |||||||||||||||||||
Sbjct: 204 tttaaaaattctagaagcatccttgagttctctgtgtggc-agctcctctgtttccattc 146
Query: 287 acagaaggtttatggatagagcattaaaagtatttacaggaatgtaaagctgcccggtat 346
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 145 acagaaggtttatggatagagcattaaaagtatttacaggaatgtaaagctgtttggtat 86
Query: 347 cagtttgtcctgcattgaagaggcaagcgtttattttccattggtgtttgaggaagactg 406
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 85 cagtttgtcctgcattgaggaggcaaacgtttattttccattggtgtttgaggaagactg 26
Query: 407 gctatcttgggcttcctattttaat 431
|||||||||||||||||||||||||
Sbjct: 25 gctatcttgggcttcctattttaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
