NNNNCCGTAACAATATATTGGAGAGAGCGGGAGCTGTGTGGGGGCNGGGC
ACAGTAGGGCTTNNNCTGCTCCTCTGCTCCTGACACAAAATAAAACTGGG
TCCCATATCAAACANCCTAAAAAACTTTTTAAGATAAATTTCTCCCNNAA
AAACTTCTTCCCTGGCTTTTCCCNAAAACCNGAAAGATNNAAACCTAAAT
CCGTTTAACCCACCTTAAAGGGTTTACCCCCCNNNTNTATTCTCTCCTTC
CCAAAAATTTTCTTTTTTTCCCNNNACCCCCCCCCNCCCCCCCCCCCTTT
TCCCCCCTTTNNNNCAACACCCTTTGTAAAAAAACCCCCNAGGCCCCCCC
CAGAAAAACCCCTCNNNNCCCAAAAACAACCCACCCCCCCCCCCCCCCCC
CCCCCNNCNNNNNNCNCCCNTNNCCCCNCCCNCCCCCNNCCNTCCCCNNC
CTTCCCCCNCCCCCCTCCCGGCCNNTNTTAAAAAAAANTTTCCGNCNNAC
CTTCTCTTCTCCCCCCCCCNNNNNCCCCNNNNNNNNNCCCCCCCNCCCCC
CCNCCCCNNNNNCNNCNCNNNNNCCCNNNNNNNNCNNNCCTCNNNNNNNC
CCNCCCCCACCCNNNCNCCNNNNCCCCNNNNNNNCCCCCNCNCCCCCNNN
CCCCCCNCNNNCCNNCCNNNNCCCCNNNCCNNCCCCNTCNNNNCCCCCCN
NNNCCCCCCCACACTCCCTTGTGGTGGGGTGTTGGAG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTGTAAACTAGATTGTGTA
TTATTATTGTGGCTTGTTTCACAAGTTTGTGGTGAAAAATGTGCTCATGA
CAATATAATCAAAGGCAACTCAGTTTACATAATACATAGTCTTGATCATG
GTTTATTAGACATGTTAGTAGTATTTCCTTACATACGTCCTAGTAAAGAG
AGGGTGGTTTCATGCATGAGGCATTTGTAGTTGTTTGGTCAGTTGTGTAA
AATTCTTAAATTTTGTTTTACTTATTTATACAGGTGTTGCCTGCTTTCCA
GTCTGTCTTAATTTTCAGACTTCCTATACTGCCTTCATGAGTTGTGGTAT
GGAGAAAGGCTTCATTCACCACCGGCTGTATTCACATAGACTTAGAAAAA
AGAAAACATATTCATTAGCCAGTATTCAGCATAATAATAAACAGAAAACT
GAACTGGACAGAAAAGTGAATTTGCTACTAATAAAACTGTTGGAAGATGC
TACGCACACTCCAGTGAAGTCTGCTTGACAGGCTGAGAGTCCTGGAAGCA
GTCCCAAGGCAAAGAAGTTCCAGGAAAACTCACCTCCTGGAATCTTGGAA
TTCTCCTATCCTCTATACTCCATACCCTATTCCCCCCATTAATCTGGGTG
TATGAACCCTTGTGCCCCCCCTTTAACATATTTTTCTTTATACGCGCCTC
TTTATGATCGCATTCTTACCATACTTATCTTTTGN

Query= MSMg01no388_m20.g1 MSMg01no388_m20.g1 CHROMAT_FILE:
MSMg01no388_m20.g1 PHD_FILE: MSMg01no388_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:12 2005
         (483 letters)



>mm_chr6_60429697_60430580
          Length = 884

 Score =  758 bits (392), Expect = 0.0
 Identities = 461/484 (95%), Gaps = 1/484 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttgtaaactagattgtgtattattattgtggcttgtttcacaagtttgtggtgaaaaa 60
           |||||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||||
Sbjct: 201 ccttgtaagctagattgtgtgttattaatgtggcttgtttcacaggtttgtggtgaaaaa 260

                                                                       
Query: 61  tgtgctcatgacaatataatcaaaggcaactcagtttacataatacatagtcttgatcat 120
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 tgtgctgatgacaatataatcaaaggcaactcagtttacataatacatagtcttaatcat 320

                                                                       
Query: 121 ggtttattagacatgttagtagtatttccttacatacgtcctagtaaagagagggtggtt 180
           |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||  |||
Sbjct: 321 ggtttattagacatgttagtagtatttcctaacatacgtcttagtaaagagagggcagtt 380

                                                                       
Query: 181 tcatgcatgaggcatttgtagttgtttggtcagttgtgt-aaaattcttaaattttgttt 239
           |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||
Sbjct: 381 tcatgcatgaggcatttgtaattgtttggtcagttgtgtcaaaattcttaaattttggtt 440

                                                                       
Query: 240 tacttatttatacaggtgttgcctgctttccagtctgtcttaattttcagacttcctata 299
           |||  |||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 441 tacagatttatacaggtgttgcctgcttttcagtctgtcttaattttctgacttcctata 500

                                                                       
Query: 300 ctgccttcatgagttgtggtatggagaaaggcttcattcaccaccggctgtattcacata 359
           ||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||
Sbjct: 501 ctgccttcatgagttgtggtatggagaaaggcttcattcactaagggctgtattcacata 560

                                                                       
Query: 360 gacttagaaaaaagaaaacatattcattagccagtattcagcataataataaacagaaaa 419
           |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 561 gacttagaaaaaagaaaacatattcattagccagtattcagcataataatgaagagaaaa 620

                                                                       
Query: 420 ctgaactggacagaaaagtgaatttgctactaataaaactgttggaagatgctacgcaca 479
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgaactggacagaaaagtgaattggctactaataaaactgttggaagatgctacgcaca 680

               
Query: 480 ctcc 483
           ||||
Sbjct: 681 ctcc 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 884
Length adjustment: 10
Effective length of query: 473
Effective length of database: 874
Effective search space:   413402
Effective search space used:   413402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)