BAC Information

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BAC

Clone NameMSMg01-389A08
Chromosome6 (Build37)
Map Location 86,020,540 - 86,020,917
singlet/doubletsinglet
Overlap genenone
Upstream geneNpm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla
Downstream geneAdd2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389A08.T7 (MSMg01no389_a08.b1)MSMg01-389A08.TJ (MSMg01no389_a08.g1)
ACCAG491375AG491376
length755771
length of high quality
(start - end)
401 (78 - 478)497 (76 - 572)
definitionCHROMAT_FILE: MSMg01no389_a08.b1 PHD_FILE: MSMg01no389_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:29 2005CHROMAT_FILE: MSMg01no389_a08.g1 PHD_FILE: MSMg01no389_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNAAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXGCGCGGAATTCCCAGGATTATCAGAGCCTACATTCCTAGTTCTGATGA
ACTTGATCTGACTCCTAAATAACTATGAAATCAACCGCCTTAATGCTTTT
GTAAAGCGAAAGCACTTGGACCACTGAGATGGCTCAGCAGGTCAAGGCAC
TTGCCACATGCCACCCGATGACCTGAGTCTGAGCCCCAAGACCCTTATGG
TAGAAGGAGGAAGCTGAGTCCAGCAGGTTGTCCTCTGGTCCCACACATGC
CCATCCACCTGACAAGACCACATACAAATAAACAAGTGGAGCTTTTGAAA
AGAAAAGAAGTAAGCAAAGCACTTGATCCGAGAGGACTAGAACAGTAGCT
TGGGCACTCGGACACCTGGGGCACCAGGCTCTAAGTGTGATAAGCAGGAT
GGGTGGGAGAACCCCCAATACAAGGTTGCAGGTTGAGAAGGAGTGAGTGG
CTTCAGCTGTCATAGCCTGTGCGTTACTCTCCCAAAGTGGGAACCGGAGT
GAGCAGATATAAACCATCTGCTCATGCTCACTTCCCCCTCCCGCCTCCCC
AGACTGTTTCCTCCCATCCCCCCCGGACATTCCCTTATACCTGGTGCTAT
CCCTAAAATGCCTCACCATAGCCATATCCCCCACCCCCCCTTGCCCCCCC
TCCCGTCCTGGCAAACACCCGCCCCCCCACCAGGACCCCCCCCCCTGCCC
CCTTC
NCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTAGTTAATGAAATTAATTTGTTA
GCTCCAACTGTCAGCCTGACATAGTCTCAGAGTTACCTGAGAAGGGACTC
TTAATTGAGGGATTGTGCAGATCCTGTTGACCCATTGACCTATCTATGAT
GGGCTGCCTTGACTCTTAATTGTTGTGATGTAGAAGGGCTTAGCCTACTA
TGGGCAGCACCATTCCCTGGGCAAGTGGTCCTAGACTGTATTAACAATCT
AGTTAGTTAAGCAGAAGCCAGCTTTTGAGTGTTCCTTTGTGGTTTTGAGT
TCCTGTAATTATAAGCCACATAAGTCCTTTCCTCCCCTAAGGTGCTTCTG
GTCAGAATGTTTCATCACAGCAATAGAAATAAAGCTAGAGGGCTGGAGAG
ATGGCTTAGTGGGTAAGAGCACTGACTGCTCTTCTGAAGGTCCTGAGTTC
AAATCCCAGCAACCACATGATGGCTCACGACCATCCATAATGAGATCTGA
TGCCCTCTTCTGGGGTGTCTGAAGACAGCTAGAGTGTACTTACCTATAAT
AAATAAATAAATCCTTTCACACAATTTCCCTAATCTCGAAATTACCGCTC
GTGTAAAAAACTTGGTAAGTTATAATGGCAGGGCATTTCGTTTAAGAAGG
GTTCTTTCTCGAAAGGGGTTTTTCAAAAGCACCTCTTCTGGCCCTTTAAT
GCTCATCATTCTTTTTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_a08.b1 MSMg01no389_a08.b1 CHROMAT_FILE:
MSMg01no389_a08.b1 PHD_FILE: MSMg01no389_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:29 2005
         (401 letters)



>mm_chr6_86020117_86020917
          Length = 801

 Score =  685 bits (354), Expect = 0.0
 Identities = 372/378 (98%)
 Strand = Plus / Minus

                                                                       
Query: 24  acttgatctgactcctaaataactatgaaatcaaccgccttaatgcttttgtaaagcgaa 83
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 801 acttgatctgactcctaaatgactatgaaatcaaccgccttaatgcttttgtaaagcaaa 742

                                                                       
Query: 84  agcacttggaccactgagatggctcagcaggtcaaggcacttgccacatgccacccgatg 143
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agcacttgggccactgagatggctcagcaggtcaaggcacttgccacatgccacccgatg 682

                                                                       
Query: 144 acctgagtctgagccccaagacccttatggtagaaggaggaagctgagtccagcaggttg 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acctgagtctgagccccaagacccttatggtagaaggaggaagctgagtccagcaggttg 622

                                                                       
Query: 204 tcctctggtcccacacatgcccatccacctgacaagaccacatacaaataaacaagtgga 263
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 tcctctggtcccacacatgcccatccacccgacaagaccacatacaaataaacaagtgga 562

                                                                       
Query: 264 gcttttgaaaagaaaagaagtaagcaaagcacttgatccgagaggactagaacagtagct 323
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 561 gcttttgaaaagaaaagaagtaagcaaagcacttgatccaagaggactagaactgtagct 502

                                                                       
Query: 324 tgggcactcggacacctggggcaccaggctctaagtgtgataagcaggatgggtgggaga 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggcactcggacacctggggcaccaggctctaagtgtgataagcaggatgggtgggaga 442

                             
Query: 384 acccccaatacaaggttg 401
           ||||||||||||||||||
Sbjct: 441 acccccaatacaaggttg 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space:   310464
Effective search space used:   310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)