BAC Information

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BAC

Clone NameMSMg01-389O20
Chromosome6 (Build37)
Map Location 144,206,103 - 144,206,519
singlet/doubletsinglet
Overlap genenone
Upstream geneD6Ertd474e, Sox5
Downstream gene4933425H06Rik, EG665149, Bcat1, Lrmp, Casc1, Lyrm5, Kras, LOC100039495
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389O20.T7 (MSMg01no389_o20.b1)MSMg01-389O20.TJ (MSMg01no389_o20.g1)
ACCAG492065AG492066
length811770
length of high quality
(start - end)
231 (76 - 306)417 (86 - 502)
definitionCHROMAT_FILE: MSMg01no389_o20.b1 PHD_FILE: MSMg01no389_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:41 2005CHROMAT_FILE: MSMg01no389_o20.g1 PHD_FILE: MSMg01no389_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTTAAGTTTGCGGCGCTAATAGAATACTATTTTCAGACCACCGCGGAAT
TCCATGTTTTTACGTTAACCAGTCTGCACATGTATGAGGAGGCCTGTGCG
CAGAGGTCAGTGTGTCCACGTGTGTGTATAGGTCAGTGTGTGCATACATA
TGTGCAGAGGTCAGGGTGTGTGCACATGTGTGTGTACCTCAGTGTGTGTG
CACGTGTGTGTAAGTCAGTGTGTGCACACGTGTGGAGGTCATTGTGTGTG
CTCTTGTGTGCAGAGGTCAGTGTGTGCATACATATGTGTGGAAGTCATTG
TGTGTGCATATATGTGCTTTTTTTTTTGTGTGGCCATTTGTGTGTGGAGG
TCAGTGCGTTTTCCTGCTTCTGACAACGCCCGTGTGTGGACTTCCCCTAT
TACTATCTTTCGCCTTCCCACTCCTCTTATTCTTTGACCGTCTCTTACCT
GCTCCTGCACACCCCCACGCCAACTTCACTGCTCTCCACCACTCGATCCT
CTCCTTTACCCCTCCCTCCCCTCCTACTCCTCCCCTTCCCCTCTCCCTCC
TTTCTCCCCCTATTTCCCTTCCCCCTTCCTCCCCTTTTTCCCCTCTCTCT
CTTCTCTCTCTCTCCTTTCCTTTCTTTCCTCTCCTCTTCCTTCTTCTCTC
TCCCTTTTCCTCTTTTTTCCTCTACTTCTCCTCCCCTTCTTTTTCCCCCT
TCCCTCCCCTTTCTGTCCCCCCTTTTCCCCCCTTCCTTCCTCCCCTCACC
TTCTCTTCCCTCCCCTCTCTTTTTCCTCCCCCTTTTTCCCCCCCCTTCCT
TTCCCTCTTCC
CCCCCNNNNACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTGTTCGGGGAAA
TCACGGTATTCATCCATCCGTTTATCTTGTTGTAAACAGGCATTTACTGA
AGGCCCACTGTGTGTGGTACACAGATCAAGTCACTGGTGATCCAAGGTTG
ACTGAAAGGTGACTGCATTCTTGTGGTTGGTATAGTCCAGGCCAAGATAC
AGAAAGCAATCACAAAATGCATGGCTCTGTGAGACTCTAACACCATTAAA
AAAAAAAATGTCCTGGCCTGATACCAAGATTGACCCTTTAAAGGAACTGG
GAGGACCACTCAGAGGCAAGAAGGCTTTTCTTCTCAAGCAGAAAGTCAGA
ACATGACTCCAACTTACTGCAATGAGCAACGCAGGGCAGAGAGCCTCTTA
GGTGTTGAGCAGGCTGCCACAAGCTAACTGTTGAGGAAAGCATGTGACCA
GAGAACTCAGTTGACTGGAGAGAGAGCAACACAAAGGGGACCAAGAGGGT
CATGTGGATCATCAGGCATAGAAGCGACTGTATAACCCATGTCTGGGAGC
CTGGTGCCCTCCCAAAAAACATCCCAGGAACCCTCTGCAACCCCTGTGTG
TGGAAATGGTCGTGATATAATAAAAAGGGGGAACTTCTTCCAAATTTGAC
CCCCATTTTACAAAATTCTGGTAGGGGGGTGGAAAGCAGTCCCCATTGTT
CTTTTTCCATTAACGGGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_o20.g1 MSMg01no389_o20.g1 CHROMAT_FILE:
MSMg01no389_o20.g1 PHD_FILE: MSMg01no389_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:41 2005
         (417 letters)



>mm_chr6_144205903_144206719
          Length = 817

 Score =  760 bits (393), Expect = 0.0
 Identities = 411/417 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttgttcggggaaatcacggtattcatccatccgtttatcttgttgtaaacaggcattt 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 atttgttcggggaaatcacggtattcatccatctgtttatcttgttgtaaacaggcattt 260

                                                                       
Query: 61  actgaaggcccactgtgtgtggtacacagatcaagtcactggtgatccaaggttgactga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgaaggcccactgtgtgtggtacacagatcaagtcactggtgatccaaggttgactga 320

                                                                       
Query: 121 aaggtgactgcattcttgtggttggtatagtccaggccaagatacagaaagcaatcacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggtgactgcattcttgtggttggtatagtccaggccaagatacagaaagcaatcacaa 380

                                                                       
Query: 181 aatgcatggctctgtgagactctaacaccattaaaaaaaaaaatgtcctggcctgatacc 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 aatgcatggctctgtgagactctaacaccattgaaaaaaaaaatgtcctggcctgatacc 440

                                                                       
Query: 241 aagattgaccctttaaaggaactgggaggaccactcagaggcaagaaggcttttcttctc 300
           | |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 aggattgaccctttaaaggagctgggaggaccactcagaggcaggaaggcttttcttctc 500

                                                                       
Query: 301 aagcagaaagtcagaacatgactccaacttactgcaatgagcaacgcagggcagagagcc 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 aagcagaaagtcagaacatgactccaacttactgcaatgagcaacacagggcagagagcc 560

                                                                    
Query: 361 tcttaggtgttgagcaggctgccacaagctaactgttgaggaaagcatgtgaccaga 417
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttaggtgttgagcaggctgccacaagctaactgttgaggaaagcatgtgaccaga 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)