BAC Information

Click to search

BAC

Clone NameMSMg01-390G05
Chromosome6 (Build37)
Map Location 68,466,172 - 68,466,457
singlet/doubletsinglet
Overlap geneIgk
Upstream geneTacstd2, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101
Downstream geneIgkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390G05.T7 (MSMg01no390_g05.b1)MSMg01-390G05.TJ (MSMg01no390_g05.g1)
ACCAG492411AG492412
length761752
length of high quality
(start - end)
194 (128 - 321)286 (76 - 361)
definitionCHROMAT_FILE: MSMg01no390_g05.b1 PHD_FILE: MSMg01no390_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:17 2005CHROMAT_FILE: MSMg01no390_g05.g1 PHD_FILE: MSMg01no390_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCCTAATTTGCGCGCGTTATACGAATCACTATTTTCCAGACCACCGCG
GAATTCTTTGATTTTCTCCATTTACAGATTTGAAGGTTTGTCACAGAGAT
CTTTCATTTGCTTGCTTAGAGTCCCCAAGATAGTTTATGTTATTTGTGAC
TGTTGTGAATGGTGTTGTTTCCCTAATTTTTTTTCTTCCCATTTATCCTT
TGAACAGAGGAAGGCTACTGCTTTGTTAGACTTAACTTTATATCCATCCT
CTTTGCTGACCTTTTTTATCAGCTGTACATCTCTGTGGTAGAATTTTTGT
GGTTGCTTATGTATCCTATCATCTGTTTTATGTGATATCTTGACTTCCTC
CTTCATAATTTGTATCCCTTTGATTTCCTTTTGTTATCTAATTGCTCCAG
CTAGAATAAATATAATACTATACTTAATAGTATGTGGTACATTTACACTA
TGGAGTACTCCTACGCTATTAACAACAATGAATTTATGAAACTCTTACCA
ACATGCATGGAACTGGAAGATACCTTCCTTACCCAGGTACCCCCATTATC
ACGCAACTCCCCTGATATGCCCTCCTTGCATAACGCCTATTACCCCCACC
AGCTCATCATACTTACCCACACCATCTTGCAAACATATGACACCTGAACA
AGGGACACCCACCGCGCCAAATACCCCCCTCCCCCCCCTTACTAATGCCC
CCACTATCATTCCCCCTGCTCCCCCCTCCATCTCCCCTCTTTTCTCTCCC
CACCCGACCCG
NCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCAAGAAATTCTATGGGCCTGTCTTTCTATAGGTTC
TTTACTTAGGGGCACATTTATCCAGTAGGTGATTAAAGCCTATAGAATGT
TAGAAAAGGCAAAACCAGATTTATACTAAAGTAAAAACGTCCTGTTTCAT
TTGCCATATACCATTTACTGAATCCTTCTGGAGGTCAGTATATAAAACAT
GAATCAAACCAGGAAAGATACAGAAGACAAGGTGACTAGTGACATGATTA
TTTTGGGAGAAATTGCTTATGTATTTATAAATATGATCAAAAGACACCTT
ATGAGATTCTTAATGATTCAATTTAAAAAAAAAGGAAAAGGGAGAAGAAA
ATATCAGTCTCCTCCTGAGTTTTGATATTTAGATTCCCATCCTCCCAGAT
ATCAGAAATATAATAGATGTATTAAATTCGCGTTACCTTTCAGGTATGCA
GTGTGTCCCAGGCTTATGAGTGGAATCTTCCCCAGGCGATGTTGCTTTTG
CCCTGCTTACATCTGAAGGACGATGCCTCCTTTGCAATATATGACCCCTG
ACGGGCTATACCTGACGGCCCTATTTTTGCCCTCACTCTCCGGTTCCTGT
ACTCTCTTGTCCTCCTGTCTGTCCATATGGCCGCCGCAATCTTGTCCCCT
TTCTCTCCCCTTGCCCCCCCTCCAGTTGGCTCCCGCCCACCCCCCATCAT
GC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_g05.g1 MSMg01no390_g05.g1 CHROMAT_FILE:
MSMg01no390_g05.g1 PHD_FILE: MSMg01no390_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:17 2005
         (286 letters)



>mm_chr6_68465972_68466657
          Length = 686

 Score =  522 bits (270), Expect = e-153
 Identities = 282/286 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgggcctgtctttctataggttctttacttaggggcacatttatccagtaggtgatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgggcctgtctttctataggttctttacttaggggcacatttatccagtaggtgatta 260

                                                                       
Query: 61  aagcctatagaatgttagaaaaggcaaaaccagatttatactaaagtaaaaacgtcctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcctatagaatgttagaaaaggcaaaaccagatttatactaaagtaaaaacgtcctgt 320

                                                                       
Query: 121 ttcatttgccatataccatttactgaatccttctggaggtcagtatataaaacatgaatc 180
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcatttgccatataccattcgctgaatccttctggaggtcagtatataaaacatgaatc 380

                                                                       
Query: 181 aaaccaggaaagatacagaagacaaggtgactagtgacatgattattttgggagaaattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaccaggaaagatacagaagacaaggtgactagtgacatgattattttgggagaaattg 440

                                                         
Query: 241 cttatgtatttataaatatgatcaaaagacaccttatgagattctt 286
           |||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 441 cttatgtataaataaatatgatcaaaagacaccttatgagattctt 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)