Query= MSMg01no390_m06.b1 MSMg01no390_m06.b1 CHROMAT_FILE:
MSMg01no390_m06.b1 PHD_FILE: MSMg01no390_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:47 2005
(246 letters)
>mm_chr6_132995233_132995877
Length = 645
Score = 221 bits (114), Expect = 4e-62
Identities = 160/178 (89%), Gaps = 11/178 (6%)
Strand = Plus / Minus
Query: 1 ttgacagattttcttaattctgctaatctaa-ctattgaaaatagtttgcatatgttaca 59
|||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||
Sbjct: 372 ttgacagattttcttaattctgcttatctaagataatgaaaatagtttgcatatgttaca 313
Query: 60 attactataatttaa--aagaaaagta-tttttattatagcatgtctgagctcaa-aact 115
||||||||||||||| |||| || ||||||||||||||||||||| | || ||||
Sbjct: 312 attactataatttaaggaaga----tattttttattatagcatgtctgatat-aacaact 258
Query: 116 tattaaaaaaaagaattggtcacagttttgaatgttttgatttttccattgggatgtc 173
|||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 257 tatt-aaaaacagaattggtcacagttttgcatgttttgatttttccattgggatgtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 645
Length adjustment: 9
Effective length of query: 237
Effective length of database: 636
Effective search space: 150732
Effective search space used: 150732
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no390_m06.g1 MSMg01no390_m06.g1 CHROMAT_FILE:
MSMg01no390_m06.g1 PHD_FILE: MSMg01no390_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:47 2005
(295 letters)
>mm_chr9_13066080_13066774
Length = 695
Score = 518 bits (268), Expect = e-151
Identities = 287/294 (97%), Gaps = 2/294 (0%)
Strand = Plus / Plus
Query: 1 atggtaaaggccatttatccagcagcctacctctgtggagggattccctggtcctgcata 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggtaaaggccatttatctagcagcctacctctgtggagggattccctggtcctgcata 260
Query: 61 ccagtcagccatgagaattgctctctcttttccagatattattggtgaacagaaagaaga 120
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagtcagtcatgagagttgctctctcttttccagatattattggtgaacagaaagaaga 320
Query: 121 actccattgacttggcaagcctagcccctcctgccttctagtgaaggtgtgagccaaagt 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 actccattgacttggcaagcctagcccctcctgccttctagtgaaagtgtgagccaaagt 380
Query: 181 ctggaaatacaaccttagaaagcaggagtccctgctggacaccagagagagagag--ggt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 ctggaaatacaaccttagaaagcaggagtccctgctggacaccagagagagagagagggt 440
Query: 239 ttctaaagagagtgagagagagagagagagagagagagagagagagagagagag 292
|||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctaaagagagagagagagagagagagagagagagagagagagagagagagag 494
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space: 196196
Effective search space used: 196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
