BAC Information

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BAC

Clone NameMSMg01-390N12
Chromosome6 (Build37)
Map Location 56,672,252 - 56,672,735
singlet/doubletsinglet
Overlap gene5830411G16Rik
Upstream geneCcdc129, Gsbs, LOC100041357, Pde1c, EG666688, Lsm5
Downstream geneLOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy, Lancl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390N12.T7 (MSMg01no390_n12.b1)MSMg01-390N12.TJ (MSMg01no390_n12.g1)
ACCAG492758AG492759
length739739
length of high quality
(start - end)
483 (75 - 557)272 (327 - 598)
definitionCHROMAT_FILE: MSMg01no390_n12.b1 PHD_FILE: MSMg01no390_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:53 2005CHROMAT_FILE: MSMg01no390_n12.g1 PHD_FILE: MSMg01no390_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNATCTATAATTTGGGCGCTAATAGATCACTAATTTCACAACACCGCGGA
ATTCAATCTCCTTACCCTCTCCTAGGGTCAAAGGACAAGCTTGAAAGTTC
CATCTTCCTACTCAAGGCATGGATTTTTTGGTGACTATCCTTTATTCTAA
AGATAGCTTAAGTATAAGTTAGCGTTTATTGGGACTGATAACAAATAATT
TATGACTCAGGAAGTTTCAAGGGTTTTAGCATCTTTGTTGAAGGAATCAA
TATTATTTTTATTATGCCCATTTGAATAACAACAAGTTTATAAAGCAGTT
AAAAACCTCCTAATATAACAGTGTTTTGATGAAACAAATAAGTAGTAGTA
CTGTGTAGCTATTAAAATTGTGAGTGTTGGGCTGGCGAGATGGCTCAGTG
GGTAAGAGCACTGACCGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCA
ACCACATGGTGGCTCACAACCATCCATAATGAGATCTGATGCCCTCTTCT
GGTGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAA
TCTTTAACAAAAATTTGAGTGTTGGGCTGGAGAGATGGCTCAGCCGGTAA
GAGCACTGACTGCTCTTCCCGAGGTCCTGAGTTCCAATCCCCAGCACGAC
TTGTTTTTTCCCAACCCCCCACNATGAGATCCTATGCCCCTTTTCTGCAG
TGCCTGAAGACAGCTACCGGGAACTTACCTATGATAAAA
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCGCGAAATTCTTTGTTTAGCTCTGTGCTCCATTTTT
TAATAGAGTTATTTGATTTTCTGGAGTCCAACTTTTTGAGTTCTTTATAT
ATAATGGATATTAGTCCCCTATCCGATTTGGGATAGGTAAAGATCCTTTC
CCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTTCTTTGCATTGC
TTAAGCTTTGCAATTTTATGAGGTCCCATTTGTCCATTCTCAATCTTACA
GCACAAGCCATTGCTATTTTTTTTAGGAATTTTTCCCCTGTGCCCATATC
TCCGAGACTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTT
TTATGTGGAATTTCTTGATCTACTTAGACTTTGCCTTAGTACAAGGAGAT
TAGAATAGATCAATTCCCATTCTTCTATATGTTAACCACCAGTTCTGCCA
GCACAATTTGTTGAAAATGCTGTCTTTTTTTCCACTGAATGGCTTTAGCT
CCCTTGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTC
TTCAATTCTATTCCATTGGTCTACCTGTCTGTTGCTATACCAGTACCTGT
TTTTTTTTATTACATTACCCCGGAGGACAGGTTGAGAGTCGGGATGGCGG
ATTCCACCAGAAGTTCTTTTATCATTGAAAAAAGTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_n12.b1 MSMg01no390_n12.b1 CHROMAT_FILE:
MSMg01no390_n12.b1 PHD_FILE: MSMg01no390_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:53 2005
         (483 letters)



>mm_chr6_56672052_56672935
          Length = 884

 Score =  874 bits (452), Expect = 0.0
 Identities = 476/484 (98%), Gaps = 1/484 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggtcaaaggacaagcttgaaagttccatcttcctactcaaggcatggattttttggtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggtcaaaggacaagcttgaaagttccatcttcctactcaaggcatggattttttggtga 260

                                                                       
Query: 61  ctatcctttattctaaagatagcttaagtataagttagcgtttattgggactgataacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ctatcctttattctaaagatagcttaagtataagttagcgtttattgggactgattacaa 320

                                                                       
Query: 121 ataatttatgactcaggaagtttcaagggttttagcatctttgttgaaggaatcaatatt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 ataatttatgactcaggaagtttcaagggttttagcatctttgttgaaggaatcaatagt 380

                                                                       
Query: 181 atttttattatgcccatttgaataacaacaagtttataaagcagttaaaaacctcctaat 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 atttttattatgcccatttgaataacaactagtttataaagcagttaaaaacctcctaat 440

                                                                       
Query: 241 ataaca-gtgttttgatgaaacaaataagtagtagtactgtgtagctattaaaattgtga 299
           |||||| | |  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataacaagaggattgatgaaacaaataagtagtagtactgtgtagctattaaaattgtga 500

                                                                       
Query: 300 gtgttgggctggcgagatggctcagtgggtaagagcactgaccgctcttccaaaggtcct 359
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 gtgttgggctggcgagatggctcagtgggtaagagcactgactgctcttccaaaggtcct 560

                                                                       
Query: 360 gagttcaaatcccagcaaccacatggtggctcacaaccatccataatgagatctgatgcc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagttcaaatcccagcaaccacatggtggctcacaaccatccataatgagatctgatgcc 620

                                                                       
Query: 420 ctcttctggtgtgtctgaagacagctacagtgtacttacatataataaataaataaatct 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcttctggtgtgtctgaagacagctacagtgtacttacatataataaataaataaatct 680

               
Query: 480 ttaa 483
           ||||
Sbjct: 681 ttaa 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 884
Length adjustment: 10
Effective length of query: 473
Effective length of database: 874
Effective search space:   413402
Effective search space used:   413402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)