BAC Information

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BAC

Clone NameMSMg01-390N16
Chromosome7 (Build37)6 (Build37)
Map Location 28,891,451 - 28,891,69436,908,944 - 36,909,213
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4
Downstream geneLOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390N16.T7 (MSMg01no390_n16.b1)MSMg01-390N16.TJ (MSMg01no390_n16.g1)
ACCAG492766AG492767
length725747
length of high quality
(start - end)
245 (79 - 323)270 (335 - 604)
definitionCHROMAT_FILE: MSMg01no390_n16.b1 PHD_FILE: MSMg01no390_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:54 2005CHROMAT_FILE: MSMg01no390_n16.g1 PHD_FILE: MSMg01no390_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:54 2005
singlet/doubletsingletsinglet
BLAST hitpluralplural
Map location.(28,891,451 - 28,891,694)(36,908,944 - 36,909,213)
sequence
CCCCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCACAACA
CCGCGGAATTCTCCAAGGTCCCTGACACCCTATAGGGNAAGGCCCAGCTG
AGGTCATGTCCCTATAGAACATGGGCAGGGCTGTGTCCACTCACCTGTGG
CCCTCGAGCCAGGCCCACAACCTGGCCTGCCACGGTCACCACCACCCGCT
GGGGATCTCCAGCTGAGTTCTTTTCGAGCACAATGGAGAACTCCTCATCT
CCAGGTTTTGGGTGACAGACGCTGGCCAGAACATAGGAGCAGGAGCCATG
AAGATCATACACCCTTCCATCATTATTTTATTAATGGAGGCCTCCGTTGG
CCAGACAGTGGCCACAGTCAGTGGGATGACAGGCCTGAACGCCATTCTCT
ATCCGGCACTCCTCATAGGGCTCACAGTCTGCTCCTTCCTGGCAGGTGAC
CTGGCCATCAGGCCCGCACTCACAGAGCCGCTCACACTCAGGGCCTGGGT
AGAAGGCGGCACCTAACACATAGTAGCGCCCTTGGTAGAGGCAGCCACAC
TGGCCCACAGGGACACAGGTGTCACCACTGAGTACGAAGTCCGCATCACA
GACACAGCCCTCACGGCAGATGGTTTCACAGCCCACACGTGCGGAGAGGC
TCGCGCTACTTCTATGGCTAGACTCCCCCTCGACCTGGTACTGCCTCGCG
CCACGTCCCCGCAGCCCTGCGAAAC
TTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATACTGATGTGAAACTCT
TTCAGTGTGTGGAAGATTGAACAGACATTGTTCGTGGAACAGAGCTTAGG
GAGTCCACACTGGTGAGAAGCTCGATCAGTATAATGGATATGGGGAAGCT
CTTTGATATCTTTACAAAATTCTTAGACATGTTAGAATTCATACTGGCAA
GAATCATCATGAATATAAAGAATGTGGGAAGTACTTTATGTGTGGTGGAG
ACCTTAAAGTACATCCAAGAATTCACATTGTTTTAAACATTACCACTGTT
AAGAATGTAGGAAGACCTTTAGTTGAATATGAAACTTGTTTTGACATCCT
AAATATAATAGTAATAAGAAGTCTTATGATGTAAGGAGTATGGAAAGGCC
TACAGTACTTCTAAGTTCCCTGTATATCAGAGAAGTTCTACTGGTGAGAA
AGCCTATGAATAAAAGTAAGGTGGGAACATGTTTAGACTTCGTGCAGCCT
TCATGCATAGTGGCAAATTCATACAGGTAGGACACCCTATCAGTATAAAG
AATGTGCCAAGACCTCCAAGTGGAGCTGGGGCCTTCTTCAACATAAAAAA
ATGCTTGCTTTGTGTCCAACCCCATGAATGCCAGGAATGTGCGGAAAAAT
TACCGAATTTACTCCAGTTCTTTTAAGTTTCTCTTATGGTCCCACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_n16.b1 MSMg01no390_n16.b1 CHROMAT_FILE:
MSMg01no390_n16.b1 PHD_FILE: MSMg01no390_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:54 2005
         (245 letters)



>mm_chr7_28891251_28891895
          Length = 645

 Score =  443 bits (229), Expect = e-129
 Identities = 240/244 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctatagggnaaggcccagctgaggtcatgtccctatagaacatgggcagggctgtgtcc 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cctatagggtaaggcccagctgaggtcatgtccctatagaacatgggcagggctgtgtcc 385

                                                                       
Query: 61  actcacctgtggccctcgagccaggcccacaacctggcctgccacggtcaccaccacccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 384 actcacctgtggccctcgagccaggcccacaacctggcctgccacggtcaccaccacacg 325

                                                                       
Query: 121 ctggggatctccagctgagttcttttcgagcacaatggagaactcctcatctccaggttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctggggatctccagctgagttcttttcgagcacaatggagaactcctcatctccaggttt 265

                                                                       
Query: 181 tgggtgacagacgctggccagaacataggagcaggagccatgaagatcatacacccttcc 240
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 264 tgggtgacagacgctggccaggacataggagcaggagccatgaagatcatacacccgtcc 205

               
Query: 241 atca 244
           ||||
Sbjct: 204 atca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no390_n16.g1 MSMg01no390_n16.g1 CHROMAT_FILE:
MSMg01no390_n16.g1 PHD_FILE: MSMg01no390_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:54 2005
         (270 letters)



>mm_chr6_36908744_36909413
          Length = 670

 Score =  484 bits (250), Expect = e-141
 Identities = 265/270 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacattaccactgttaagaatgtaggaagacctttagttgaatatgaaacttgttttga 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacattaccactgtcaagaatgtaggaagacctttagttgaatatgaaacttgttttga 260

                                                                       
Query: 61  catcctaaatataatagtaataagaagtcttatgatgtaaggagtatggaaaggcctaca 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 catcctaaatataatagtaataagaagtcttatgatgtaaggaatatggaaaggcctaca 320

                                                                       
Query: 121 gtacttctaagttccctgtatatcagagaagttctactggtgagaaagcctatgaataaa 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaattctaagttccctgtatatcagagaagttctactggtgagaaagcctatgaataaa 380

                                                                       
Query: 181 agtaaggtgggaacatgtttagacttcgtgcagccttcatgcatagtggcaaattcatac 240
           ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 agtaaggtgggaaaatgtttagacgtcgtgcagccttcatgcatagtggcaaattcatac 440

                                         
Query: 241 aggtaggacaccctatcagtataaagaatg 270
           ||||||||||||||||||||||||||||||
Sbjct: 441 aggtaggacaccctatcagtataaagaatg 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space:   172521
Effective search space used:   172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)