BAC Information

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BAC

Clone NameMSMg01-391B13
Chromosome6 (Build37)
Map Location 23,242,214 - 23,242,452
singlet/doubletsinglet
Overlap geneCadps2
Upstream geneWnt16, D6Wsu176e, LOC100040948, LOC100040959, LOC668018, LOC668022, Ptprz1, Aass, EG668044, EG546894, EG668053, EG384356, Fezf1
Downstream geneRnf133, Rnf148, Tas2r118, LOC100041082, Slc13a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391B13.T7 (MSMg01no391_b13.b1)MSMg01-391B13.TJ (MSMg01no391_b13.g1)
ACCAG492952AG492953
length593776
length of high quality
(start - end)
409 (71 - 479)240 (75 - 314)
definitionCHROMAT_FILE: MSMg01no391_b13.b1 PHD_FILE: MSMg01no391_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:12 2005CHROMAT_FILE: MSMg01no391_b13.g1 PHD_FILE: MSMg01no391_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAACTGATGACAACCGGTATGGCTGAGAAGCACCTGAAAAAAAAA
AATGTTCTACATCCTTAATCATCAGGGAAATGAAAATCAAAACAACCCTG
AGATTCTACCTCACACTAGTCAGAATAGCTAACATCAAAAATTCAGGTGA
CAGCAGATGCTAGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATGGCT
GGTGGGATTGCACGCTTGTACCACCACTCTGGAAATCAGTGTGGCGGCTC
CTCAGAAAATTGGACAGAGTACTACTGGAAGATCCAGCAATAACTCGTCC
GGGCATATACCCATAAGATGTTTCAACTGGTAATAAGAACACATGCTCCA
CTATGTTCATAGCACCCTTATTCATAATAGCCAGAAGCTGGAAAGAACCC
AGATGTCCCACAATAAAAGAGTGAATACCGAAAATGTGGTACATTTACCC
AATGGAGCACTACTCCGCTACTTAAATCCATGAATTTCCTGAAATTCTTA
GGCAAATGGAGGCATCTGGAGGGGCACCCCCCCGGAAAGGAGG
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTCTGTTTGGAGAAGCTATGCTAAT
GAGCAAGATGGGGAAGCATGCGTAGTAAGCGGAAAGGTTCAAATTGAAAA
TATGAAGAAAAATAATTTTATAATCCTAAATTATACTTAATAGGGTGCTC
ACCGTGTGGTTTTTAATTGTCATCTTCTCATATTCATTAAGGAGGCTATA
ATTTAATTACCAATAAGAGAAAAGATTTCTAAACGTGGCTCTGTCGGATA
CGCTCTTCTTGCTTGATCCGTTTACGAGCGCATCGTCATGGAAGCTTCAC
AGGTTGCTCTTTTGGTGGAATTGCAAGGCACACCTGCTTGTGCGACAATT
TGGAGCTGCCTTCTCCTCCTCTTCCTCCTCTGCCTCCTCCATAACCACCA
CCATTACCACTACCACCACCACCATCACCACCACTACCTCCACCATTACC
ATCACCTCCTCTTCCCTCTCCACAGATTAAATGCTAACACCTCGTTTCAT
CTATCTTCCAACCCCTACCCCCACCGCTTACACCCAGAGTGCCCTATTTC
CGCCCCCTCATCTTCAGCCCTTACCTCTCAATATATACCGTTCACCGCCC
CCCCTTTCCCTTCTTGCGCACTCTCTCCCCTGCCCTTATTTTATCCGCTT
TCCTCTTCTTTACTTCCCTCCCCCTCCTTTTTCCCCGTTTCCTCTGTCAA
TCGCCCCCCACTCCTCCCTTTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_b13.g1 MSMg01no391_b13.g1 CHROMAT_FILE:
MSMg01no391_b13.g1 PHD_FILE: MSMg01no391_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:12 2005
         (240 letters)



>mm_chr6_23242014_23242653
          Length = 640

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctctgtttggagaagctatgctaatgagcaagatggggaagcatgcgtagtaagcggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tctctgtttggagaagctatgctaatgagcaagatggggaagcatgcgtagtaagcggaa 380

                                                                       
Query: 61  aggttcaaattgaaaatatgaagaaaaataattttataatcctaaattatacttaatagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aggttcaaattgaaaatatgaagaaaaataattttataatcctaaattatacttaatagg 320

                                                                       
Query: 121 gtgctcaccgtgtggtttttaattgtcatcttctcatattcattaaggaggctataattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtgctcaccgtgtggtttttaattgtcatcttctcatattcattaaggaggctataattt 260

                                                                      
Query: 181 aattaccaataagagaaaagatttctaaacgtggctctgtcggatacgctcttcttgct 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aattaccaataagagaaaagatttctaaacgtggctctgtcggatacgctcttcttgct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)