BAC Information

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BAC

Clone NameMSMg01-391F11
Chromosome6 (Build37)
Map Location 57,151,423 - 57,151,856
singlet/doubletsinglet
Overlap genenone
Upstream genePde1c, EG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4
Downstream geneV1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391F11.T7 (MSMg01no391_f11.b1)MSMg01-391F11.TJ (MSMg01no391_f11.g1)
ACCAG493137AG493138
length739781
length of high quality
(start - end)
434 (71 - 504)454 (76 - 529)
definitionCHROMAT_FILE: MSMg01no391_f11.b1 PHD_FILE: MSMg01no391_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:31 2005CHROMAT_FILE: MSMg01no391_f11.g1 PHD_FILE: MSMg01no391_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXAATCCCAGAGGATCCGCGGAATTCTAGAT
TTTCCCCATGTAAACAGTACTAATGTAATCAGCTTGAATCATCCAGATGC
TGTGCCCTGAAGAAATGACTCATCCTAATTCCATATATTACCTCCATCAG
CATCTGACCTGTGCAAGAATATACAAAGCCATATTTTCAGTATGTCCTAA
GTTCAGTTTCCCACAAATCTATTGCCTATAGCCGATGAATCAGTAAACAA
TTGCACATCTGTCCACATCTAATTTCATGTCAAATATATTTGTAATCTCT
GAAGTTTTATATAAGTTTCTTCACTTATGTCTTTCATGATTGTCTAAGAG
ATAGGTTGTAATGCAATAGCTGTATACTTCTGGGCAGAATCTGCATGGGG
GCAGACCCCTCAGTAAACCAGGCCCTAATCTTGTTTTCTTCAGTCATCCA
ATCATAGGTCACACCGTGCAATCCCCACAGAATATTCTTGGTGACTGAAG
ACCGTGTACTAGGAGTAGAGTCATAGGTATTTTTCATTACTTGTTGTACC
CTAAGAACCTGCTAAGGCCTTGTCACATAATCCCTACATGAATTTGAAGA
CTAATGGATATTGTGCCCCCCCCCACTCCAAACTTGTTTGTTCCAATAAT
ACCCCGCTTAAACCCAACCCAAATTCCCTTGGGAATCTGCTGACCCCCTG
TCAAATGTTCGGTTCCTCCCACCATCTCCTACCACGGAC
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATGTAGCTATATGCCCCATTTTTT
AATTGGGTTATTTGGGTTGTTGGTGTCTAATTTCTTGAGTTCCTTATACA
TTTTGCAGATTAGTCCTTCTCATATATAGATCTTTCCAAATATGTAGACT
GCCTTTTCATCCTATTTACAGTGTCCTTTGCCTTACAGAAGCTTTGCAGT
TTCATGAGGTTCCATTAATCAATTGTTGATCTTAGAGTCTGAGCCATTGT
TCTGTTCAGGAAATTGGCTCATGTACCATTGTGTTCAAAGCTAATTTCCA
ATTTCCCTTCTGTTAGATTTAATGTATTTGGTTTTACCTTGAGGACCTTG
ATACACTTGGGCTTGAGTTTTGTGCAGGGTGAAAAATATGGTTCTATTGC
ATTCATTCACATGAAGACATCTAGTTAAACCAGAACCATATATTGAAGAT
ATTTTCTTTTATCAACTTTATGATTTTGGCATCTTTATTAAAAGCAAAGT
CTCCAAAGGTATGTGGCTTTTTTGGGGGGTATCAATACCATGCTGTTATT
GTCATTATCGCCCTGCAAAAGAACCTGGAGGCCAGGAACACGGACTATTC
CTTNACCTCATTTCATGGAAGACCCAATACCTCTTAAAAAGATCTTTGCG
AGTTCTTATTTGTTTCTTCCATCCGAATCGGGTATACTCCGTTTCATTTG
CGGCCCTACTCCTCGCCCGGCCCTTTTCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_f11.b1 MSMg01no391_f11.b1 CHROMAT_FILE:
MSMg01no391_f11.b1 PHD_FILE: MSMg01no391_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:31 2005
         (434 letters)



>mm_chr6_57151223_57152056
          Length = 834

 Score =  839 bits (434), Expect = 0.0
 Identities = 434/434 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatgtaatcagcttgaatcatccagatgctgtgccctgaagaaatgactcatcctaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatgtaatcagcttgaatcatccagatgctgtgccctgaagaaatgactcatcctaatt 260

                                                                       
Query: 61  ccatatattacctccatcagcatctgacctgtgcaagaatatacaaagccatattttcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatatattacctccatcagcatctgacctgtgcaagaatatacaaagccatattttcag 320

                                                                       
Query: 121 tatgtcctaagttcagtttcccacaaatctattgcctatagccgatgaatcagtaaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgtcctaagttcagtttcccacaaatctattgcctatagccgatgaatcagtaaacaa 380

                                                                       
Query: 181 ttgcacatctgtccacatctaatttcatgtcaaatatatttgtaatctctgaagttttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgcacatctgtccacatctaatttcatgtcaaatatatttgtaatctctgaagttttat 440

                                                                       
Query: 241 ataagtttcttcacttatgtctttcatgattgtctaagagataggttgtaatgcaatagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataagtttcttcacttatgtctttcatgattgtctaagagataggttgtaatgcaatagc 500

                                                                       
Query: 301 tgtatacttctgggcagaatctgcatgggggcagacccctcagtaaaccaggccctaatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtatacttctgggcagaatctgcatgggggcagacccctcagtaaaccaggccctaatc 560

                                                                       
Query: 361 ttgttttcttcagtcatccaatcataggtcacaccgtgcaatccccacagaatattcttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgttttcttcagtcatccaatcataggtcacaccgtgcaatccccacagaatattcttg 620

                         
Query: 421 gtgactgaagaccg 434
           ||||||||||||||
Sbjct: 621 gtgactgaagaccg 634


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)