BAC Information

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BAC

Clone NameMSMg01-391K16
Chromosome6 (Build37)
Map Location 143,935,985 - 144,112,129
singlet/doubletdoublet
Overlap geneSox5
Upstream gene5730419I09Rik, Etnk1, D6Ertd474e
Downstream gene4933425H06Rik, EG665149, Bcat1, Lrmp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391K16.T7 (MSMg01no391_k16.b1)MSMg01-391K16.TJ (MSMg01no391_k16.g1)
ACCAG493385AG493386
length755773
length of high quality
(start - end)
244 (65 - 308)243 (75 - 317)
definitionCHROMAT_FILE: MSMg01no391_k16.b1 PHD_FILE: MSMg01no391_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:57 2005CHROMAT_FILE: MSMg01no391_k16.g1 PHD_FILE: MSMg01no391_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,111,886 - 144,112,129)(143,935,985 - 143,936,227)
sequence
TTGCCGGCGCTAAACGACTCACTATTTTCACACCACCGCGGAATTCTGTT
TCTTCCCCATCGGCAGAACCCAGGGAGTGCATCCAGACCTCTAAGGGACA
ATGGCAGGAATGAGGTCCTCAAATGAGGGTAGATCGAGCAGAAAGTCAGA
GGACAGTAAGTTCTGTATGCAACGCTGAAGGGAAAGAGAGAAAAATATGG
TAGAGAAGTTTGAAAGACTGCATGTTTACCATAAATAAATCCTGCAGCAG
ACTTGTAGCTATGATGAACCAGACTTGGTTTACGCAATTGATATGGCATC
TTCAGAGCACTTTTTTCAATTCTGGGTAGGGAAGTGATGTTTAAATCTTG
TAGGAGAGAAGAAAAAATGTAAACTGTAAGATATAAACAACCACAATTGA
AATTCCCCCCACCCAGGCAAGAGCAGATATTTGCTTTTGATACTGTGACA
TTCTAAGTGTGTGACCAGATTATACCTCCCAGGGCTGTGTTCCTTGTTTC
ACCCACTGAGTTTAAATAGATTCACTCCGCCTCCCTATCTCTTTCCACTG
CCCCTAATGGGGCGCCCGCCTTTCTGCCCCGCCTTCCTTTTTTTTTCCGC
CCCCCACCTTTGTTTTTTTTTCCCCCCCCCCCCCCCCCCCTTTCCCCCCC
TTTTTGCTCCCCCCCCCCCCTTCCCCTCCCTCCTCTTTCCCTCTTTCTGT
GTTCCTTCCCCCCCCCCCCTCTTTCTCTCCCGCCCCTCTCCCTCTTTCCC
CTCTT
ACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATCTAATCAAGGGCTTAATCAAATC
ATTGACATTGCTTCAGAGGTTATATTTGTAGAGATGTATTAAATATAATT
AAGTTTTTAATATTCCTTGTAGAGTTTAGATGGACACATGAATTATACAG
TCAGCAACAATGCAGCATTTGTTGGAATGGTCCCCTCACACATACACTGT
TCCCCTCTCACACACCCTGGTCCCCTCACACACACCCTGGTCCCCTCATA
CACACCCTGGTTCTATGACTACTTCCTGGNCCCCTCACACACTCTGGTAC
TGTGACACACACCCTGGTCCTCTGACACACCCTGGTCTTGTGACACATAC
CCTGGTCCTGTGCCCCACACCTTGGTCCTATCTTACACACCCTGGTACCA
TCACACATACATACCCTGGTCCCACCACACACACCCTGGCCCTGTGACAA
ACACCCTGGGCCTCTCATACACTCCCTGGTTCCCTCACACACTCACACCC
TTGGTCCCATCACACTACACCTTGATTCTGCCATACATTTCTGCACCCCC
CTTCCCGCCCCCTCTTGACCACTGTACTACCTTTCCAATCAAAGAATTCT
TTTTTTTTTGCCAAATCCCAACCCCCGCCCCCCCTTTTGTTTACCCTTCT
CCCTTTTTTACCCCCCCCTCACCTTCCTCCTCGCCTTTTCTTCTCCCCCT
CCCCTTCCCCCTTTTTCTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_k16.b1 MSMg01no391_k16.b1 CHROMAT_FILE:
MSMg01no391_k16.b1 PHD_FILE: MSMg01no391_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:57 2005
         (244 letters)



>mm_chr6_144111686_144112329
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaacccagggagtgcatccagacctctaagggacaatggcaggaatgaggtcctcaaat 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 444 agaacccagggagtgcatccaggcctctaagggacaatggcaggaatgaggtcctcaaat 385

                                                                       
Query: 61  gagggtagatcgagcagaaagtcagaggacagtaagttctgtatgcaacgctgaagggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gagggtagatcgagcagaaagtcagaggacagtaagttctgtatgcaacgctgaagggaa 325

                                                                       
Query: 121 agagagaaaaatatggtagagaagtttgaaagactgcatgtttaccataaataaatcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agagagaaaaatatggtagagaagtttgaaagactgcatgtttaccataaataaatcctg 265

                                                                       
Query: 181 cagcagacttgtagctatgatgaaccagacttggtttacgcaattgatatggcatcttca 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 264 cagcagacttgtagctatgatgaaccagacttggtttacacaattgatatggcatcttca 205

               
Query: 241 gagc 244
           ||||
Sbjct: 204 gagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no391_k16.g1 MSMg01no391_k16.g1 CHROMAT_FILE:
MSMg01no391_k16.g1 PHD_FILE: MSMg01no391_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:58 2005
         (243 letters)



>mm_chr6_143935785_143936427
          Length = 643

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatctaatcaagggcttaatcaaatcattgacattgcttcagaggttatatttgtagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatctaatcaagggcttaatcaaatcattgacattgcttcagaggttatatttgtagaga 260

                                                                       
Query: 61  tgtattaaatataattaagtttttaatattccttgtagagtttagatggacacatgaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtattaaatataattaagtttttaatattccttgtagagtttagatggacacatgaatt 320

                                                                       
Query: 121 atacagtcagcaacaatgcagcatttgttggaatggtcccctcacacatacactgttccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 atacagtcagcaacaatgcagcatttgttggaatggtcccctcacacatacactggtccc 380

                                                                       
Query: 181 ctctcacacaccctggtcccctcacacacaccctggtcccctcatacacaccctggttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctcacacaccctggtcccctcacacacaccctggtcccctcatacacaccctggttct 440

              
Query: 241 atg 243
           |||
Sbjct: 441 atg 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)