BAC Information

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BAC

Clone NameMSMg01-392I06
Chromosome6 (Build37)
Map Location 52,950,561 - 52,950,806
singlet/doubletsinglet
Overlap geneJazf1
Upstream geneSkap2, LOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1, EG666487, 1700094M24Rik, EG545841, Hibadh, Tax1bp1
Downstream geneLOC666259, LOC666516, D430007I03, Creb5, LOC384386, 1200009O22Rik, Cpvl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392I06.T7 (MSMg01no392_i06.b1)MSMg01-392I06.TJ (MSMg01no392_i06.g1)
ACCAG494032AG494033
length753753
length of high quality
(start - end)
244 (78 - 321)244 (71 - 314)
definitionCHROMAT_FILE: MSMg01no392_i06.b1 PHD_FILE: MSMg01no392_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:04 2005CHROMAT_FILE: MSMg01no392_i06.g1 PHD_FILE: MSMg01no392_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCACACAGGAT
CCGCGGAATTCACATATACCTGTTCCTGAAGGAATTAGACAACGCAAGGC
CTTCCTCAGCCCTTCAAAGTTCTTGAGTTTTGTTAAGTTACTTGCATTCT
ACCTCAAATGTTTTATTCCTAGAACCAGGAACAGAAGTGACACAAATTTC
TAACCATAGCTTTGAGCAGTTCCAAACAGCTCAAGCTGTAACCATGGAAT
GAATCTGTCTTACAGGGGTGCTTTCTAATTCCCCACTAAATACCAACCCA
CCCACCCACAGACCTTCCACTTTTGTTTGAAGGTACTTTTCATCCCATGT
AGCTCCACAACGAGTCTCCTGAAGTACTTTTGTGTAATTTTAAAAGCATG
TGTATTCTGCGAATGTTAACCCATGTAAAAGCCTGCAAGTCACCTGTAGA
GAACATAACCAGGAATAGTAGTGGCCATGGGCCATATGACCTATAGTCAA
GTGCTGGGAAGGCAAGCGTGTTCCTGTAACCTGTAACCTCTGGGCTTCTC
ATTCTGAAGGCATGAAGCCCAGAGATACGTCTCATAAAGAACATCCTGAA
AGTCAGGAATGAGGGGCCCAGGGTCTCAGCTGGCTTCTCCAGCTAAAAGG
CACCAAGTAGCCACCTAAGCCAGAAAACCCCCAGCAGTCCCCCACGCTAA
ATAAAATGTTGCTACCGCCCGGGGCACAAAAAAGAAGATGACCCCCTACG
CAC
GACAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGACAGAGAAG
CACCTGAAAAAATGTTCAACATCTTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGT
CTGGCGGTTCCTCATATAATTGTTACATAGTACTACCGGAGGATCCCGCA
ATACCTCTCCTGGGCATATATCCAGAAGAGGTGCCAACTGGTAAGAAGGA
CACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGG
TACATCTACCCAATGGAGTACTACTCAGCTATTATAAAGAATGAATTTAT
GAAATTCCTATGCCAATGGACGCACCTGTAGGGCCCCTTCCTGAGTGAGG
GCACACTTTTACCAAGGAATCCCCTTTATATGTACTCCCTGATAAGGGGA
TATAATTCTCCTACCCAGGTAACCCCCCCACCCACCATATCCTTTTGCTA
ACCCCTTTTACCTTCCCACCATTGTCCACTCACGTCTGGTTCTTTTTTCC
CTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_i06.b1 MSMg01no392_i06.b1 CHROMAT_FILE:
MSMg01no392_i06.b1 PHD_FILE: MSMg01no392_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:04 2005
         (244 letters)



>mm_chr6_52950363_52951006
          Length = 644

 Score =  406 bits (210), Expect = e-118
 Identities = 231/246 (93%), Gaps = 13/246 (5%)
 Strand = Plus / Plus

                                                                       
Query: 12  acaacgcaaggccttcctcagcccttcaaagttcttgagttttgttaagttacttgcatt 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 acaacgcaaggccttcctcagcccttcaaagttcttgagttttgttaagttacttgcatt 258

                                                                       
Query: 72  ctacctcaaatgttttattcctagaaccaggaacagaagtgacacaaatttctaaccata 131
           ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 259 ctacctcaaatgttttattcctagaaccaggaacagaggtgacacaaatttccaaccata 318

                                                                       
Query: 132 gc-------------tttgagcagttccaaacagctcaagctgtaaccatggaatgaatc 178
           ||             |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gcagaatcatataactttgagcagttccaaacagctcaagctgtaaccatggaatgaatc 378

                                                                       
Query: 179 tgtcttacaggggtgctttctaattccccactaaataccaacccacccacccacagacct 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgtcttacaggggtgctttctaattccccactaaataccaacccacccacccacagacct 438

                 
Query: 239 tccact 244
           ||||||
Sbjct: 439 tccact 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)