BAC Information

Click to search

BAC

Clone NameMSMg01-393F17
Chromosome6 (Build37)
Map Location 67,269,869 - 67,270,308
singlet/doubletsinglet
Overlap geneIl12rb2
Upstream geneTpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1
Downstream geneLOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igk, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393F17.T7 (MSMg01no393_f17.b1)MSMg01-393F17.TJ (MSMg01no393_f17.g1)
ACCAG494674AG494675
length786785
length of high quality
(start - end)		443 (37 - 479)419 (66 - 484)
definitionCHROMAT_FILE: MSMg01no393_f17.b1 PHD_FILE: MSMg01no393_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:15 2005CHROMAT_FILE: MSMg01no393_f17.g1 PHD_FILE: MSMg01no393_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATAA
CTTATATTCAGCAACCCTAGTACAAAGTGGAGAAATAGGAAGCAGTCATG
CTGTTGGTTTGCCTTACTGAGATGAGGGTTCACTGTGTTGCCTGGGATAG
CCTTGAGTTCCTAGGCTTGCTGATTGCCCCGAATCAGCGTTTTTAGTAGT
CAGGACTGTAGGTGCATCACAGTCCTATTCTAATTTTGATTTAAAATGTT
AAGCATCACTCCACGATCTTCCATGCCTCTGTTCTTCCTCCCCTGCAGGC
TATCAGCTCACTTGACATTCTCATGGGTTTGAACAAAGCTTGCCTCATCA
CAGGAAGGCTGCTCTCACTTTCTCTAATTACCTTGTGAATCTTCATGATC
GTTTCGTGTCCTGTACATTAGTATTATCTTAAGTTAACTCATAATGAAAG
TATGTACGGAGAGGCTAAACACCTTGCTTAAGAACACACGAGGTCCACCA
CTATTTAGCTGCAACAGAGTCACTTAGAGACTCCTGCTTTCTCATTATGG
CAGAGGCTAGAACTCTTGCTAGACCTGGCATATTCCTCCACTGCCCCCGA
AATGAGTGAGACCCTGATTCTCCATCCAGAAACCGTACCCTTATTGTACC
CGAATCTCTTACCCCCCCCTTTAAGAACCCAATCGCTTTTCAATTCCTGG
GCCAGGGTCCTGGTGACCCCAAATTTTCCCCCCCCCCCTGTCCCTGGAAA
AATTGGAAGAACGGCGGGGGAACTTTTTAAAAAAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXATTGTTTTTAATAGCTGAGTAGTACTCCATTGTAT
AAATGCACCACATTTTCTGTATTCATTCCTCTGTTGAGGGACATCTGGGT
TCTTTCCAGCTCCTGGCTATTGTAAATAACGCTGCTATGAACATAGTGGA
GCATGTGTCCTTATTACAAGTTGGGACATCTTCTGGGTATATGCCCAGGA
GAGGAATTGCTGGATCTTCTGGTAGTACTATTGTCCAATTTTCTGTGGAA
CCACCAGATTGATTTCCAGAGTGGTTGTACCAACTTGCAATCCCACCAAC
AATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCA
CCTTTATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTAGAATCTCAG
GGTTGTTTTGATTTGCATTTCCCTGATGATTAATGATTTTGAACCTTTTT
TTCAGGTTCTTCTCAGCTATTCGGGATTCCTCAGTTGAGAATTATTTCTT
TAGCCCTGGACCCCATTTTTTAATAAGGTTATTTGAATTTCTTGAGACCT
TTAATAATATGGAATTAATCCCCTATCCGACCTCAGTAAGGTTAAGACCC
TTTCCCCATCCTGTGGGGGCCTTTTTTTTTATTTCAATATGTCTTTCCCT
TAATTTTACTCCACTAAATTTTCCTTCTTATTTCCCACCCAACATACCAT
CCTCTTTTTTTTTTTACTCTCTTTTAAATTACAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_f17.b1 MSMg01no393_f17.b1 CHROMAT_FILE:
MSMg01no393_f17.b1 PHD_FILE: MSMg01no393_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:15 2005
         (443 letters)



>mm_chr6_67269666_67270508
          Length = 843

 Score =  797 bits (412), Expect = 0.0
 Identities = 433/440 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcataacttatattcagcaaccctagtacaaagtggagaaataggaagcagtcat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcataacttatattcagcaaccctagtacaaagtggagaaataggaagcagtcat 263

                                                                       
Query: 64  gctgttggtttgccttactgagatgagggttcactgtgttgcctgggatagccttgagtt 123
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 264 gctgttggtttgccttactgagatgagggttcactgtgttgcccaggatagccttgagtt 323

                                                                       
Query: 124 cctaggcttgctgattgccccgaatcagcgtttttagtagtcaggactgtaggtgcatca 183
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctaggctcgctgattgccccgaatcagcgtttttagtagtcaggactgtaggtgcatca 383

                                                                       
Query: 184 cagtcctattctaattttgatttaaaatgttaagcatcactccacgatcttccatgcctc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cagtcctattctaattttgatttaaaatgttaagcatcactccacgatcttccatgcctc 443

                                                                       
Query: 244 tgttcttcctcccctgcaggctatcagctcacttgacattctcatgggtttgaacaaagc 303
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 444 tgttcttcctcccctgcaggctatcagctcacttgacatcctcatgggtttgaacaaagc 503

                                                                       
Query: 304 ttgcctcatcacaggaaggctgctctcactttctctaattaccttgtgaatcttcatgat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttgcctcatcacaggaaggctgctctcactttctctaattaccttgtgaatcttcatgat 563

                                                                       
Query: 364 cgtttcgtgtcctgtacattagtattatcttaagttaactcataatgaaagtatgtacgg 423
            || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agtctcgtgccctgtacattagtattatcttaagttaactcataatgaaagtatgtacgg 623

                               
Query: 424 agaggctaaacaccttgctt 443
           ||||||||||||||||||||
Sbjct: 624 agaggctaaacaccttgctt 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |