Query= MSMg01no393_h03.b1 MSMg01no393_h03.b1 CHROMAT_FILE:
MSMg01no393_h03.b1 PHD_FILE: MSMg01no393_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:23 2005
(568 letters)
>mm_chr6_15490444_15491417
Length = 974
Score = 990 bits (512), Expect = 0.0
Identities = 554/572 (96%), Gaps = 10/572 (1%)
Strand = Plus / Minus
Query: 7 gaattctcttcg-aatttacatcagcatttatcctttgacctgaccatgttgacttgaag 65
|||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 gaattctcttcgaaaattatatcagcatttatcctttgacctgaccatgttgacttgaag 706
Query: 66 gatttattttaggcacaagcccactcttacttctggctggcatgtgcctgcctgggtgga 125
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 705 gatttattttaggcacaagcctactcttacttctggctggcatgtgcctgcctgggtgga 646
Query: 126 gactgcatttcctgcactccattgcagccagcagcagccatgaacaagtcgatggtgtat 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gactgcatttcctgcactccattgcagccagcagcagccatgaacaagtcgatggtgtat 586
Query: 186 gtgatgtgtgtcatccctgagcttctgctgatatcatgaatatctgccaattcaattgtt 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 gtgatgtgtgtcatccctgagcttctgctgatatcatgaatatctgccaattcaattgtt 526
Query: 246 tctgtcctgtagattgagaagaacatgtcccaagacagcc----attgttcttttgttct 301
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 525 tctgtcctgtagattgagaagaacatgtcccaagacagccattgattgttcttttgttct 466
Query: 302 gacctggaaaggaggtgtggggagctttctgctgtcaggatcatagaaaaatagccctt- 360
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 465 gacctggaaaggaggtgtggggagctttctgctgtcaggatcatagaaaagtagccctta 406
Query: 361 aaaaaaaagcgtatgcaccaagtaagacagaaaggaaacgtgagccattgacatccaggg 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 405 aaaaaaaagcgtatgcaccaagtaagacagaaaggaaatgtgagccattgacatccaggg 346
Query: 421 actcttgatgttgatatgggattccctagtgaaagtagatgtggacaaaagctattccta 480
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 345 actcttgatgttgatatggaatgccctagtgaaagtagatgtggacaaaagctattccta 286
Query: 481 tgtaagaaaggaatcataagaagataatctcatttggggatagaggaatggctgagcagt 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tgtaagaaagggatcataagaagataatctcatttggggatagaggaatggctgagcagt 226
Query: 541 taaagagtgcatactattt----ttagagaag 568
||||||||||||||||||| |||||||||
Sbjct: 225 taaagagtgcatactatttattcttagagaag 194
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 974
Length adjustment: 10
Effective length of query: 558
Effective length of database: 964
Effective search space: 537912
Effective search space used: 537912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no393_h03.g1 MSMg01no393_h03.g1 CHROMAT_FILE:
MSMg01no393_h03.g1 PHD_FILE: MSMg01no393_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:23 2005
(447 letters)
>mm_chr6_15299343_15300186
Length = 844
Score = 841 bits (435), Expect = 0.0
Identities = 443/447 (99%), Gaps = 3/447 (0%)
Strand = Plus / Plus
Query: 1 accttaaagaaagagccatgaggaataagaataatgcctagacagggcatgaagtagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accttaaagaaagagccatgaggaataagaataatgcctagacagggcatgaagtagaaa 260
Query: 61 ttatagttactttctgcagacaaaaggtgcttaacttatgggaagtatttcttcttaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatagttactttctgcagacaaaaggtgcttaacttatgggaagtatttcttcttaata 320
Query: 121 ttaaaggctcattccacaactgagcatgttccattgggtgtcagatgcaggcagtagtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaaaggctcattccacaactgagcatgttccattgggtgtcagatgcaggcagtagtct 380
Query: 181 tgccatccatgcacagtgaaaaagtcaaccattccgtatgctcaccagaagcatctcact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgccatccatgcacagtgaaaaagtcaaccattccgtatgctcaccagaagcatctcact 440
Query: 241 ttctttatattatcaaagtgtaaaatcatggttcccctgaatatgtgcttttatgactaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctttatattatcaaagtgtaaaatcatggttcccctgaatatgtgcttttatgactaa 500
Query: 301 cccccccccccacaacgtagtttgccattgatgactttgctttgcttctagaagctttgg 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccccccccc---aacgtagtttgccattgatgactttgctttgcttctagaagctttgg 557
Query: 361 agttggctgtaagcccttgtaaatttccccaggcatcccaacccaagagagcaaattcca 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 558 agttggctgtaagcccttgtaaatttccccaggcatcccaacccaagaaagcaaattcca 617
Query: 421 gattgaaaacaggaagctgggttgaca 447
|||||||||||||||||||||||||||
Sbjct: 618 gattgaaaacaggaagctgggttgaca 644
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 844
Length adjustment: 10
Effective length of query: 437
Effective length of database: 834
Effective search space: 364458
Effective search space used: 364458
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
